Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2474 ATGGTGCTTAATGAGAGGCCGTCAAAGAGGATGAAGAGGAGGGTATCGGCCGATCTCTACGACTTtctcacttttccggcaaacgGAGACCACTTTTCCGACGAATCAGTCGGCGGTGAGCCTTTTCGAAAGGCCGTTCAGCGGTTCCTTACAAATCATGCGCGCCTTACTTTTCCGCCTTCGCTCTTCCCCTCTCTGATGACGTGGCAGATCTTGTACAGGATCGGAGGACTGGTGGACGGACCGGATCCGTCGCCGGCGATGGTCACGCTCGACATTGTCGAGGAGGACGTGACGAGATCTCGAAGCTCAGTCTACTGTGACCAGTGCCGAGTCGTTGgatgGAGTGCGCATCCTGTGTGTCGAAAGCGATATCATTTCATAATAAGGACGGCTAGTAATCACATGGAAGCTTATCAAAGACCTTGTTCAAGGTGTTTGCATCTTCTCCAATTATCCGAAGAACGGTGTAAATTTTGCAACAACGAGATAACCGCTGATGATCTGGAGGATTGGGTGTATTCCCAAATTGAAGATAACACCCATCTGCTGCACGGTATTGTGCACTCGAATGGTTAtggccacttgctcactctcaaTGGAAGAGAAGGTGGCTCAAAGCTTCTATCAGGATCTGACATAATGGGATTCTGGGATAGGCTTTGTGCTGCACTTGGCGTTAGGAAAGTTAGTGTGATGGATTTGTCTAAAAAATTTGGGTTGGAATATCGATTGCTTCATGCAATCACAAATGGGTGTTCCTGGTATGGGAACTGGGGCTATGAATTTGGGACTGGAAGCTATGCTCTCACCCAAGATTTGTACCAGAAAGCAGTGAACACCCTGGCAAACATGCCCTTGTCAAATTTGTTATTCCAGGATCGCGGCGCACGCAGCCGTTTGCAATGTGTTATTTCTCTTTATCAATCCCTTGCACATACTGAGCTTGTAACTATCAAAGATCTATTCTCCTTCTTGGTGACATTGATTCGTGACTTTCGCACTGCTACGAGAACAACATCCAATCATCTTGAATCTACTGGAACCTGTAGTGTATTGTGTGCTTGGACAAGGAATGATGTGGAATCTGTGCAAGAGGCTTTGATCAAGGTACTGCTTGCTTCAGCTGCCTCTGGTGGACCCAAATGGCTATCAAGACGTGCTCTAAAGGGTGCAGTATGCAGGGGTGTTCCATCTCCGGAGCTTCTAGATTACAGTCTTAAACATTTGGGTGGGAAATCAGCACCCAATGGCATGATAGTTAGATCACGATGCAATCCAGTTTCTAGTGGTGTGGAGTTCAGGCTTGATGCTGTGGAAAACGCAGTTAATGCAAATTCGAGTTACCCATCAGAAGAGCTAGTGATATCTGATATTAAATTCTTATTTGATTCAATAATTCATCCTGATAGGATGGTAAGCTACAGACCGAATACTATGAGAAAACGTGTAGCAGATTCGGCAAGGAAGCTTCTCGACTGTAAGCAGTTTGTGAAGGATTACAAGCCTGGAAAGATGGTAGTAGAACTGCCTTCATCCATTAGGCTGTGGTGTCACGTGGAGCTGTCAGATCAGCCCAAAGATGATCCAACCCCACCTCCCGAGCTAATTGTGCTGCCGTTGAATGCTACTGTAGCTGACCTCAAGGACGAGGCGACCAATGCTTTTCAAGAGGTATATGCGATGTTCAAGAGGTTTCAAGTTGAGGAACTACTAGAATATGGATCTATTGTCAAGGATAATCTCACATTAAAATTTCTCCTGGGAACGAGTGGGTCAGTACGAGTCCTTGGCAAGTGTCCTGCAAAACATGGACTAAACCGTTTCCGAATGGAAAGAGGAACAGAGACGTGGAAAGTTGATTGCCAATGTGGGGCAAAGGACGATGATGGAGAAAGAATGTTGGCCTGTGATATATGTGGTGTGTGGCAGCATACTAGGTGCGCTGGAATTGATAATTCATACGCTCTACCTACCAAGTTTGTGTGCTTGAGATGCATCACATCATATCGAAAGGAAGCGAAGAAAATGCCAAACCCTGCCGTTGCCGTTGAGGAAGCCAAAAGCCCTTGTAAACCAAACACGTCTTGCAGGGAGGAAGTGGTGGGTACTGATAATCCTGCAGTTGCTTGTAAAATGCCTGTTAATTTTGGTGTACGTTGA 2163 0.4521 MVLNERPSKRMKRRVSADLYDFLTFPANGDHFSDESVGGEPFRKAVQRFLTNHARLTFPPSLFPSLMTWQILYRIGGLVDGPDPSPAMVTLDIVEEDVTRSRSSVYCDQCRVVGWSAHPVCRKRYHFIIRTASNHMEAYQRPCSRCLHLLQLSEERCKFCNNEITADDLEDWVYSQIEDNTHLLHGIVHSNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCAALGVRKVSVMDLSKKFGLEYRLLHAITNGCSWYGNWGYEFGTGSYALTQDLYQKAVNTLANMPLSNLLFQDRGARSRLQCVISLYQSLAHTELVTIKDLFSFLVTLIRDFRTATRTTSNHLESTGTCSVLCAWTRNDVESVQEALIKVLLASAASGGPKWLSRRALKGAVCRGVPSPELLDYSLKHLGGKSAPNGMIVRSRCNPVSSGVEFRLDAVENAVNANSSYPSEELVISDIKFLFDSIIHPDRMVSYRPNTMRKRVADSARKLLDCKQFVKDYKPGKMVVELPSSIRLWCHVELSDQPKDDPTPPPELIVLPLNATVADLKDEATNAFQEVYAMFKRFQVEELLEYGSIVKDNLTLKFLLGTSGSVRVLGKCPAKHGLNRFRMERGTETWKVDCQCGAKDDDGERMLACDICGVWQHTRCAGIDNSYALPTKFVCLRCITSYRKEAKKMPNPAVAVEEAKSPCKPNTSCREEVVGTDNPAVACKMPVNFGVR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2474 720 Pfam PHD-finger 622 668 IPR019787 -
Sto7g2474 720 ProSitePatterns Zinc finger PHD-type signature. 622 666 IPR019786 -
Sto7g2474 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 673 IPR013083 -
Sto7g2474 720 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 690 - -
Sto7g2474 720 SMART PHD_3 621 667 IPR001965 -
Sto7g2474 720 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 690 - -
Sto7g2474 720 CDD PHD_MMD1_like 621 666 - -
Sto7g2474 720 SUPERFAMILY FYVE/PHD zinc finger 612 669 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2474 Sto-Chr7 30198844 30201824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2474 83 666 PHD Transcription Factor Family AT5G22260 29.642 7.97e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto7g2474 PHD 5.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2474 - - gmx:100780558 1085.09