Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2419 ATGCCCCACCTGGTCTTGATAAATGATCGTTTCTCTACTGGATTAGATTGTGATGTGACAGAGGTGCCTTGTCTCCGGAGAGCTGCATCTGTAGAAGAGGAATATGAAGCTGCTGGAGGAGAAGTTTTACTTGATAATGAAGATAATGATGGGTGGCTAGCAACTCATGGGAAACCCAAGGAAAGCAAATCTGATGAGGATGAGAATGTACCTTCCATGGAAAGCCTAGAAATCAGCAAAAAGGGTTCCATTAAACCAATTGCTTCTTACATGGGAGGTggcgaggaggaagaggaaataCCAGATATGGCAGACTTTGAAGAAGCTGACAACATTATCGAAACAGATCCTCTTCACAAATGTGTTTTAATTGAAAATGTACTTTCGCCCTTCCTTAGAGAAGGAATGGACCATGATTCTAATATTAAGCCAGACTCCCTCGCCTCCTATCCTCCGCCGCCACCGCAAAATTTTGCATCGGAGTACCAAAACCCATCGCAGCATTTCGAACATCATGTAACTTCTTCAGATTATCAAACTTCATCGAAATCACTTCCACCGGACGGTCAAAGAACTGATAATACTCCCCTGGATGCCTCCACCAACGGCCACACGGCCACGACGGTTGACCCGTCGGAGaagggtgatggtggtgccgaTATCAGTTCGAAGCCTGGGTTTGTCAAGCCGTTGGTCTCGGAGAACGGCTTGACTAATACTCAGAGTGGCACTGACAGGGACCAATCTGGTGGTGAAGAAGAGACTACCAGCAGGCGGCGGAGGCGAAGTCGATGGGATCCCCAGCCCGAGTCGAACGACCAGAACGGGGCCGAATCCGGAAGCGGAACGCGGAAAAGGAAGTCCCGTTGGGCTGATGATGAGCCAAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAACTCTGAACAGTAGGCTGCTTGACATTAGTCGAATGCTACAATCAGGTTTGCCTTTAGACGATCGTCCGGAAGGTGCTCGTTCGCCTTCGCCTGAACCTATATATGATAACATGGGGATTAGAATTAACACTAGAGAATATCGTGCGCGGGAAAGATTGCAAAAGGAAAGGCAAGAAATTATATCTCAGATTATAAAGAAAAATCCCGCATTTAAACCACCAGCAGATTACAGGCCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCCGGTTACAATTTTATAGGGCTTATTATTGGTCCGAGAGGCAACACTCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGGCTGCAACAGAAAAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTGTTAGTGGAGGCTGAGACACCGGAATCACTTGAGGCAGCTGCAGGTATGGTGGAGAAGCTCTTGCAGCCAGTGGATGAGGTGTTGAATGAGCACAAGAGGCAACAACTTAGGGAACTCGCGGCCTTGAATGGGACAATTAGGGACGAAGAATTTTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCCTGTCCTTCCCGCACTTCTACCTTTAAGAGTGAAGTTGTCTGTAAACATTGTGGCGATGGTGGTCACCCAAGCATAGATTGTCCAGTAAAAGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTTCTTGCAGAGTTGGGTGGGACAGTTCCTGAGTCGGCAACAAAACAAACTAGCACATTGGCACTTGGTTCGAGCAATCCTGGAAGCAATCCTCCATGGGCTAATAATTCTGCCTCTGCTGGTGGTGCACCACATCCTGGCTTAGGGGCTACTgcaataaaaaaggaaattgacGATACGAATTTGTATATTGGGTATTTGCCACCCACTCTTGATGATGATGGTCTGATCCAACTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGACTAATTTGAGTAAAGGGTATGGATTCGTGAAGTATGCTGATGTTCAGATGGCCAATAATGCGATTATGGCCATGAATGGTTATAGGCTTGAGGGTCGAACTATTGCAGTGAGAGTTGCGGGTAAGCCTCCACAGCCTCCAGTACCTCCTGGCCCACCCACCTCTGCTGTGCCCACATATCCTGTATCAAGCCAGCCAGGTGCTGCTTATCCATCCCAACAATATGCTGCTGGAGGTCCCCTTGGGGCTGCGCCCCCTGTAAGTTATGCTGGTGCCCCTCCTCCCTGGGGACCACCTGTTCCTTCTCCATATGCTCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCAGTCCAGACAGGTCCCCCTGGTGCCTCATCCCAGCCTGCAACTTCTAGTGAAGTACAGCAGAGTTACCCTCCAGGAGTGCAGACTGACAATAGTTCCTCCACTCAATCTATATATGGGAGCACAGTACCTCCAATGCCACCAACAGCTCAACCTACATATCCTGCATCTTATGGTTATCCACCATATTACAATGCAGTTCCGCCTCCGCCACCTGTTCCTGTAACTGTCTCGACTGCTGATCAATCCCAGATCATTGGAAACGTTCCTTGGGCCACAAATCCTCCAGTGCCTCCGCCTGCTTCATCTTCAGAGAAGACGGCATATGGTGCAGATTCAGAGTACGAAAAGTTCATGGCTGAGATGAAATGA 2781 0.4678 MPHLVLINDRFSTGLDCDVTEVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPKESKSDEDENVPSMESLEISKKGSIKPIASYMGGGEEEEEIPDMADFEEADNIIETDPLHKCVLIENVLSPFLREGMDHDSNIKPDSLASYPPPPPQNFASEYQNPSQHFEHHVTSSDYQTSSKSLPPDGQRTDNTPLDASTNGHTATTVDPSEKGDGGADISSKPGFVKPLVSENGLTNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPESNDQNGAESGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLDISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPSRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLALGSSNPGSNPPWANNSASAGGAPHPGLGATAIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPPVPPGPPTSAVPTYPVSSQPGAAYPSQQYAAGGPLGAAPPVSYAGAPPPWGPPVPSPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGASSQPATSSEVQQSYPPGVQTDNSSSTQSIYGSTVPPMPPTAQPTYPASYGYPPYYNAVPPPPPVPVTVSTADQSQIIGNVPWATNPPVPPPASSSEKTAYGADSEYEKFMAEMK 926
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2419 926 MobiDBLite consensus disorder prediction 710 735 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 51 74 - -
Sto7g2419 926 SMART c2hcfinal6 544 560 IPR001878 GO:0003676|GO:0008270
Sto7g2419 926 SMART c2hcfinal6 518 534 IPR001878 GO:0003676|GO:0008270
Sto7g2419 926 MobiDBLite consensus disorder prediction 40 78 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 785 804 - -
Sto7g2419 926 PANTHER RNA-BINDING PROTEIN RELATED 208 926 IPR045071 -
Sto7g2419 926 MobiDBLite consensus disorder prediction 785 849 - -
Sto7g2419 926 Gene3D - 311 388 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 247 268 - -
Sto7g2419 926 Gene3D - 599 717 IPR012677 -
Sto7g2419 926 SUPERFAMILY RNA-binding domain, RBD 631 725 IPR035979 GO:0003676
Sto7g2419 926 CDD SF1_like-KH 398 514 - -
Sto7g2419 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 634 712 IPR000504 GO:0003723
Sto7g2419 926 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 208 926 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 807 847 - -
Sto7g2419 926 SMART kh_6 397 489 IPR004087 GO:0003676
Sto7g2419 926 MobiDBLite consensus disorder prediction 442 463 - -
Sto7g2419 926 ProSiteProfiles Zinc finger CCHC-type profile. 519 534 IPR001878 GO:0003676|GO:0008270
Sto7g2419 926 MobiDBLite consensus disorder prediction 586 616 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 137 304 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 586 611 - -
Sto7g2419 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 636 705 IPR000504 GO:0003723
Sto7g2419 926 MobiDBLite consensus disorder prediction 160 209 - -
Sto7g2419 926 ProSiteProfiles Type-1 KH domain profile. 412 484 - -
Sto7g2419 926 Pfam Splicing factor 1 helix-hairpin domain 286 393 IPR032570 -
Sto7g2419 926 MobiDBLite consensus disorder prediction 712 729 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 331 351 - -
Sto7g2419 926 MobiDBLite consensus disorder prediction 891 913 - -
Sto7g2419 926 SUPERFAMILY Retrovirus zinc finger-like domains 515 561 IPR036875 GO:0003676|GO:0008270
Sto7g2419 926 ProSiteProfiles Zinc finger CCHC-type profile. 545 559 IPR001878 GO:0003676|GO:0008270
Sto7g2419 926 Pfam KH domain 412 485 IPR004088 GO:0003723
Sto7g2419 926 Gene3D - 518 570 - -
Sto7g2419 926 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 397 523 IPR036612 GO:0003723
Sto7g2419 926 MobiDBLite consensus disorder prediction 280 296 - -
Sto7g2419 926 Gene3D K Homology domain, type 1 389 517 IPR036612 GO:0003723
Sto7g2419 926 SMART rrm1_1 635 708 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto7g2419 Sto-Chr7 29687182 29698684 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2419 634 825 Eukaryotic Initiation Factors Gene Family AT3G16380 26.341 1.69e-10 62.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2419 K13095 - gmx:100800982 1076.23