Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto7g2419 | ATGCCCCACCTGGTCTTGATAAATGATCGTTTCTCTACTGGATTAGATTGTGATGTGACAGAGGTGCCTTGTCTCCGGAGAGCTGCATCTGTAGAAGAGGAATATGAAGCTGCTGGAGGAGAAGTTTTACTTGATAATGAAGATAATGATGGGTGGCTAGCAACTCATGGGAAACCCAAGGAAAGCAAATCTGATGAGGATGAGAATGTACCTTCCATGGAAAGCCTAGAAATCAGCAAAAAGGGTTCCATTAAACCAATTGCTTCTTACATGGGAGGTggcgaggaggaagaggaaataCCAGATATGGCAGACTTTGAAGAAGCTGACAACATTATCGAAACAGATCCTCTTCACAAATGTGTTTTAATTGAAAATGTACTTTCGCCCTTCCTTAGAGAAGGAATGGACCATGATTCTAATATTAAGCCAGACTCCCTCGCCTCCTATCCTCCGCCGCCACCGCAAAATTTTGCATCGGAGTACCAAAACCCATCGCAGCATTTCGAACATCATGTAACTTCTTCAGATTATCAAACTTCATCGAAATCACTTCCACCGGACGGTCAAAGAACTGATAATACTCCCCTGGATGCCTCCACCAACGGCCACACGGCCACGACGGTTGACCCGTCGGAGaagggtgatggtggtgccgaTATCAGTTCGAAGCCTGGGTTTGTCAAGCCGTTGGTCTCGGAGAACGGCTTGACTAATACTCAGAGTGGCACTGACAGGGACCAATCTGGTGGTGAAGAAGAGACTACCAGCAGGCGGCGGAGGCGAAGTCGATGGGATCCCCAGCCCGAGTCGAACGACCAGAACGGGGCCGAATCCGGAAGCGGAACGCGGAAAAGGAAGTCCCGTTGGGCTGATGATGAGCCAAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAACTCTGAACAGTAGGCTGCTTGACATTAGTCGAATGCTACAATCAGGTTTGCCTTTAGACGATCGTCCGGAAGGTGCTCGTTCGCCTTCGCCTGAACCTATATATGATAACATGGGGATTAGAATTAACACTAGAGAATATCGTGCGCGGGAAAGATTGCAAAAGGAAAGGCAAGAAATTATATCTCAGATTATAAAGAAAAATCCCGCATTTAAACCACCAGCAGATTACAGGCCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCCGGTTACAATTTTATAGGGCTTATTATTGGTCCGAGAGGCAACACTCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGGCTGCAACAGAAAAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTGTTAGTGGAGGCTGAGACACCGGAATCACTTGAGGCAGCTGCAGGTATGGTGGAGAAGCTCTTGCAGCCAGTGGATGAGGTGTTGAATGAGCACAAGAGGCAACAACTTAGGGAACTCGCGGCCTTGAATGGGACAATTAGGGACGAAGAATTTTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCCTGTCCTTCCCGCACTTCTACCTTTAAGAGTGAAGTTGTCTGTAAACATTGTGGCGATGGTGGTCACCCAAGCATAGATTGTCCAGTAAAAGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTTCTTGCAGAGTTGGGTGGGACAGTTCCTGAGTCGGCAACAAAACAAACTAGCACATTGGCACTTGGTTCGAGCAATCCTGGAAGCAATCCTCCATGGGCTAATAATTCTGCCTCTGCTGGTGGTGCACCACATCCTGGCTTAGGGGCTACTgcaataaaaaaggaaattgacGATACGAATTTGTATATTGGGTATTTGCCACCCACTCTTGATGATGATGGTCTGATCCAACTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGACTAATTTGAGTAAAGGGTATGGATTCGTGAAGTATGCTGATGTTCAGATGGCCAATAATGCGATTATGGCCATGAATGGTTATAGGCTTGAGGGTCGAACTATTGCAGTGAGAGTTGCGGGTAAGCCTCCACAGCCTCCAGTACCTCCTGGCCCACCCACCTCTGCTGTGCCCACATATCCTGTATCAAGCCAGCCAGGTGCTGCTTATCCATCCCAACAATATGCTGCTGGAGGTCCCCTTGGGGCTGCGCCCCCTGTAAGTTATGCTGGTGCCCCTCCTCCCTGGGGACCACCTGTTCCTTCTCCATATGCTCCTTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCAGTCCAGACAGGTCCCCCTGGTGCCTCATCCCAGCCTGCAACTTCTAGTGAAGTACAGCAGAGTTACCCTCCAGGAGTGCAGACTGACAATAGTTCCTCCACTCAATCTATATATGGGAGCACAGTACCTCCAATGCCACCAACAGCTCAACCTACATATCCTGCATCTTATGGTTATCCACCATATTACAATGCAGTTCCGCCTCCGCCACCTGTTCCTGTAACTGTCTCGACTGCTGATCAATCCCAGATCATTGGAAACGTTCCTTGGGCCACAAATCCTCCAGTGCCTCCGCCTGCTTCATCTTCAGAGAAGACGGCATATGGTGCAGATTCAGAGTACGAAAAGTTCATGGCTGAGATGAAATGA | 2781 | 0.4678 | MPHLVLINDRFSTGLDCDVTEVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPKESKSDEDENVPSMESLEISKKGSIKPIASYMGGGEEEEEIPDMADFEEADNIIETDPLHKCVLIENVLSPFLREGMDHDSNIKPDSLASYPPPPPQNFASEYQNPSQHFEHHVTSSDYQTSSKSLPPDGQRTDNTPLDASTNGHTATTVDPSEKGDGGADISSKPGFVKPLVSENGLTNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPESNDQNGAESGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQTLNSRLLDISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPSRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLALGSSNPGSNPPWANNSASAGGAPHPGLGATAIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPPVPPGPPTSAVPTYPVSSQPGAAYPSQQYAAGGPLGAAPPVSYAGAPPPWGPPVPSPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPVQTGPPGASSQPATSSEVQQSYPPGVQTDNSSSTQSIYGSTVPPMPPTAQPTYPASYGYPPYYNAVPPPPPVPVTVSTADQSQIIGNVPWATNPPVPPPASSSEKTAYGADSEYEKFMAEMK | 926 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 710 | 735 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 51 | 74 | - | - | |
Sto7g2419 | 926 | SMART | c2hcfinal6 | 544 | 560 | IPR001878 | GO:0003676|GO:0008270 | |
Sto7g2419 | 926 | SMART | c2hcfinal6 | 518 | 534 | IPR001878 | GO:0003676|GO:0008270 | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 40 | 78 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 785 | 804 | - | - | |
Sto7g2419 | 926 | PANTHER | RNA-BINDING PROTEIN RELATED | 208 | 926 | IPR045071 | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 785 | 849 | - | - | |
Sto7g2419 | 926 | Gene3D | - | 311 | 388 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 247 | 268 | - | - | |
Sto7g2419 | 926 | Gene3D | - | 599 | 717 | IPR012677 | - | |
Sto7g2419 | 926 | SUPERFAMILY | RNA-binding domain, RBD | 631 | 725 | IPR035979 | GO:0003676 | |
Sto7g2419 | 926 | CDD | SF1_like-KH | 398 | 514 | - | - | |
Sto7g2419 | 926 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 634 | 712 | IPR000504 | GO:0003723 | |
Sto7g2419 | 926 | PANTHER | BRANCHPOINT-BRIDGING PROTEIN-LIKE | 208 | 926 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 807 | 847 | - | - | |
Sto7g2419 | 926 | SMART | kh_6 | 397 | 489 | IPR004087 | GO:0003676 | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 442 | 463 | - | - | |
Sto7g2419 | 926 | ProSiteProfiles | Zinc finger CCHC-type profile. | 519 | 534 | IPR001878 | GO:0003676|GO:0008270 | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 586 | 616 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 137 | 304 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 586 | 611 | - | - | |
Sto7g2419 | 926 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 636 | 705 | IPR000504 | GO:0003723 | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 160 | 209 | - | - | |
Sto7g2419 | 926 | ProSiteProfiles | Type-1 KH domain profile. | 412 | 484 | - | - | |
Sto7g2419 | 926 | Pfam | Splicing factor 1 helix-hairpin domain | 286 | 393 | IPR032570 | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 712 | 729 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 331 | 351 | - | - | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 891 | 913 | - | - | |
Sto7g2419 | 926 | SUPERFAMILY | Retrovirus zinc finger-like domains | 515 | 561 | IPR036875 | GO:0003676|GO:0008270 | |
Sto7g2419 | 926 | ProSiteProfiles | Zinc finger CCHC-type profile. | 545 | 559 | IPR001878 | GO:0003676|GO:0008270 | |
Sto7g2419 | 926 | Pfam | KH domain | 412 | 485 | IPR004088 | GO:0003723 | |
Sto7g2419 | 926 | Gene3D | - | 518 | 570 | - | - | |
Sto7g2419 | 926 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 397 | 523 | IPR036612 | GO:0003723 | |
Sto7g2419 | 926 | MobiDBLite | consensus disorder prediction | 280 | 296 | - | - | |
Sto7g2419 | 926 | Gene3D | K Homology domain, type 1 | 389 | 517 | IPR036612 | GO:0003723 | |
Sto7g2419 | 926 | SMART | rrm1_1 | 635 | 708 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto7g2419 | Sto-Chr7 | 29687182 | 29698684 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto7g2419 | 634 | 825 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.341 | 1.69e-10 | 62.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto7g2419 | K13095 | - | gmx:100800982 | 1076.23 |