Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2418 ATGTACGTGAAGACAGGATCGATCATCAAGGGCGGAACCGATTCCAACATCAGCGTGACTCTCGGCGACGTCTCCGGCCGCTACGTGTGGGTCCCGAACCTGAAGGCATGGGGTCTGATGTCTCCCGGCCATAACTACTTCGAGCGAGGCAACCTCGATGTGTTCACTGGGCGTGGGCCCTGCATCGGATCGCCGGTGTGCCGCCTCAACCTCACCTCCGACGGCACCGGATCTCACCACGGTTGGTTCTGCGAGTACGTCGAGGTCACCTCAACTGGGCCCCACAAGCGCTGCTCGCAGACCGTGTTCTACGTCGATCAGTGGCTCGCCGACAACGCCCCGCCGTTCCAGCTGACCGCCGTTGTCGACGCGTGCGTCGGCGCGGCGGCGGCGGAGAACGAGGGCGGGAAATTGGTTGTGAGGAATCGCAGGCATGGGAGTATAATTGATAATACTCCTCCTCCGGATGCCTCCACCAACGGCCACACCACCACGGCGGTGGACCCGTCTGATGGCGGTGCCGATAACAGTTTGAATCCTGGGCTTGTGAAACCCTTGGTTTCGGAGAACGGCTTGACTAATAATACGCACAGTGGTACTACTGACAGGGACCAATCTGGTGGTGAAGAGGAGACTACAAGCAGGCGGCGGAGACGAAGTCGATGGGATCCCCAGCCCGAGTCGAACGACCAGAGTGGAGGCGAATCGGGAAGCGGAACAACGCGGAAAAGGAAGTCCCGTTGGGCTGATGACGAGCCGAAGCCGGTGGCTCAGCTTCCTGATTTCTTGTGCGGTATCGAGTTTGATCCTGAAATTCAAGTTTTGAACAGTAGGCTTCTTGAAATTAGTCGAATGCTACAATCAGGTTTGCCTTTAGATGATCGACCGGAAGGTGCTCGATCGCCTTCCCCTGAACCTATATATGATAATAATGGGGTTAGAATTAACACCAGAGAATATCGTGCGCGTGAAAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAACCCCGCGTTTAAACCACCAGCAGATTACAGGCCACCAAAGCTTCAGAAGAAGCTTTATATACCAATGAAAGAATATCCCGGTTACAATTTTATAGGGCTTATTATTGGTCCTAGAGGCAATACTCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGGCTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTGTTAGTGGAGGCGGAGACACAGGAATCACTTGAGGCAGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCAGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTCAGGGAACTCGCGGCCTTGAATGGGACAATTAGGGACGAAGAATTTTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCATGTCCTTCCCGCACTTCGACATTTAAGAGTGAAGTTGTCTGTAAACATTGTGGCGATGGCGGTCATCCAAGCATAGACTGTCCAGTAAAGGGTGCTACTGGGAAAAAGATGGATGATGAGTATCAGAACTTTCTGGCAGAGTTGGGTGGGACAGTTCCTGAATCAGCAACAAAACAAACCACCACCCTGGCACTTGGTTCAAGCAATTCTGGAAGTAATCCTCCATGGGCTAACAATTCTGCCTCAGCTGGTGGTGCACCACATCCTGGCTTAGGGGCTAATGCAATTAAGAAAGAAATTGATGATACAAATTTGTATATTGGGTATTTGCCACCCACTCTTGATGATGATGGTTTGATCCAACTATTCCAACAATTTGGTGAGATTGTTATGGCAAAAGTTATCAAGGATCGAATGACTAATTTGAGTAAAGGATATGGATTTGTTAAGTATGCTGATGTTCAAATGGCCAATAATGCAATTATGGCCATGAATGGTTATCGGCTTGAGGGTAGAACTATTGCAGTGAGGGTTGCTGGTAAGCCTCCTCAGCCTGCAGTACCTCCTGGCCCACCCTCATCTGCTGTGCCCACATATCCTGTTTCAAGCCAGCCAGTTGGTGCCTATCCGTCCCAGCAATATGGAGCTGGAGGTCCCCTTGGGGCTGCGCCCCCTGTAAGTTATGCTGGTGCCCCTCCTCCCTGGGGACCACCTGTTCCTTCTCCATATGCTCCTTATGCTCCTCCCCCACCTGGGTCAACAATGTATCCACCTATGCAAGGTCAACCTATGCCTCATTATGGTGTTCAATATCCTCCAGTCCAGACAGGTCCCCCTGGTGCCTCATCCCAGCCTGCAGCTTCTAGTGAAGCACAACAGAGTTGCCCTCCAGGAGTGCAGGCTGACAATAGTTCATCCACTCATTCTATATATGGGAGCTCAGTAGCTGCAATGCCACCAACAGGTCAACCAACATATCCTGCATCTTATGGCTATACATCATATTACAATGCAGTTCCTCCACCACCTCCGCCTCCTGTTCCTGTATCTTCAGATCAATCCCAGAGCATTGGAAATGTGCCATGGGCTACAAATCCTCCTGTGCCCCCACCTGGTTCATCTTCTGAAAAGACGACATATGGTACTGATTCAGAGTATGAAAAGTTCATGGCTGAGATGAAATGA 2652 0.5049 MYVKTGSIIKGGTDSNISVTLGDVSGRYVWVPNLKAWGLMSPGHNYFERGNLDVFTGRGPCIGSPVCRLNLTSDGTGSHHGWFCEYVEVTSTGPHKRCSQTVFYVDQWLADNAPPFQLTAVVDACVGAAAAENEGGKLVVRNRRHGSIIDNTPPPDASTNGHTTTAVDPSDGGADNSLNPGLVKPLVSENGLTNNTHSGTTDRDQSGGEEETTSRRRRRSRWDPQPESNDQSGGESGSGTTRKRKSRWADDEPKPVAQLPDFLCGIEFDPEIQVLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNNGVRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPSRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTTTLALGSSNSGSNPPWANNSASAGGAPHPGLGANAIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPAVPPGPPSSAVPTYPVSSQPVGAYPSQQYGAGGPLGAAPPVSYAGAPPPWGPPVPSPYAPYAPPPPGSTMYPPMQGQPMPHYGVQYPPVQTGPPGASSQPAASSEAQQSCPPGVQADNSSSTHSIYGSSVAAMPPTGQPTYPASYGYTSYYNAVPPPPPPPVPVSSDQSQSIGNVPWATNPPVPPPGSSSEKTTYGTDSEYEKFMAEMK 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2418 883 MobiDBLite consensus disorder prediction 546 574 - -
Sto7g2418 883 ProSiteProfiles Type-1 KH domain profile. 370 442 - -
Sto7g2418 883 MobiDBLite consensus disorder prediction 203 225 - -
Sto7g2418 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 592 670 IPR000504 GO:0003723
Sto7g2418 883 MobiDBLite consensus disorder prediction 765 807 - -
Sto7g2418 883 Pfam KH domain 370 442 IPR004088 GO:0003723
Sto7g2418 883 CDD SF1_like-KH 356 472 - -
Sto7g2418 883 ProSiteProfiles PLAT domain profile. 1 123 IPR001024 GO:0005515
Sto7g2418 883 SMART kh_6 355 447 IPR004087 GO:0003676
Sto7g2418 883 MobiDBLite consensus disorder prediction 240 254 - -
Sto7g2418 883 Gene3D - 269 346 - -
Sto7g2418 883 MobiDBLite consensus disorder prediction 141 256 - -
Sto7g2418 883 MobiDBLite consensus disorder prediction 819 871 - -
Sto7g2418 883 SMART c2hcfinal6 502 518 IPR001878 GO:0003676|GO:0008270
Sto7g2418 883 SMART c2hcfinal6 476 492 IPR001878 GO:0003676|GO:0008270
Sto7g2418 883 Pfam Splicing factor 1 helix-hairpin domain 244 351 IPR032570 -
Sto7g2418 883 Pfam PLAT/LH2 domain 2 111 IPR001024 GO:0005515
Sto7g2418 883 SUPERFAMILY RNA-binding domain, RBD 589 683 IPR035979 GO:0003676
Sto7g2418 883 SMART rrm1_1 593 666 IPR000504 GO:0003723
Sto7g2418 883 MobiDBLite consensus disorder prediction 290 311 - -
Sto7g2418 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 594 663 IPR000504 GO:0003723
Sto7g2418 883 Gene3D - 476 528 - -
Sto7g2418 883 PANTHER RNA-BINDING PROTEIN RELATED 157 883 IPR045071 -
Sto7g2418 883 Gene3D - 554 667 IPR012677 -
Sto7g2418 883 MobiDBLite consensus disorder prediction 400 421 - -
Sto7g2418 883 ProSiteProfiles Zinc finger CCHC-type profile. 503 517 IPR001878 GO:0003676|GO:0008270
Sto7g2418 883 SUPERFAMILY Retrovirus zinc finger-like domains 473 519 IPR036875 GO:0003676|GO:0008270
Sto7g2418 883 MobiDBLite consensus disorder prediction 188 202 - -
Sto7g2418 883 Gene3D K Homology domain, type 1 347 475 IPR036612 GO:0003723
Sto7g2418 883 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 157 883 - -
Sto7g2418 883 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 355 481 IPR036612 GO:0003723
Sto7g2418 883 MobiDBLite consensus disorder prediction 152 172 - -
Sto7g2418 883 ProSiteProfiles Zinc finger CCHC-type profile. 477 492 IPR001878 GO:0003676|GO:0008270
Sto7g2418 883 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 2 112 IPR036392 GO:0005515
Sto7g2418 883 MobiDBLite consensus disorder prediction 743 807 - -
Sto7g2418 883 Gene3D PLAT/LH2 domain 1 113 - -
Sto7g2418 883 MobiDBLite consensus disorder prediction 546 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2418 Sto-Chr7 29673291 29680659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2418 592 783 Eukaryotic Initiation Factors Gene Family AT3G16380 27.317 8.22e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2418 K13095 - gmx:100800982 1075.08