Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2398 ATGGGGATAGATTTGGAGCATCCTTCTGGAGAATATCATAAGGACGACAGTAGGCATCATGTAGTAGCTGATGTGGTTGATGGAGTGGATAAAGTAAATTGTAGAAATGAACCCACTAATTGTTTAGAAGTTCTTGGAAATGATAAGGAGAATGCAGGGCCAGAGATAAATGCTGAATTATCAGTCTGTAGAAACAAAGGCCGCATTGAACAAGGAATCAACTTGAATTCTTCAAAAATATCAGAGCCTCACGATGGAATGGAGTTTGATTCGAAGGAGGATGCATTTTCGTACTACAAAGAGTATGCCAAATCTGTGGGATTTTCTGCTATAATAAAAGCCAGCCGGCGATCTAGAATATCTGGAAAATTTATTGATGCCAAATTTGCATGTACCAGATATGGAAACAAACGAGAACCCAGTGCAGCTGAAACTCTGGATTCTCTTTCATATACAGACAACATGCCAACATTGCCAAGTACTCCTGTAAAAAGGAAACGAGGTAGAGTGAATCTGTCTTGGGCAAAAACAGATTGCAAGGCCTGCATGCATGTCAAAAGAAGGCAAGATGGTAGATGGGTTATCTGTAGTTTCATAAAAGATCATAACCATGAAATATTACCTGACCAAGCCTACTACTCTAGGGGACACGGGAACCTAGATCTAGTAATCAGTAATGCTGATGCTTTGAAGTCTATTAGGGCTAGAACAAAAAAGATGTATCTTACAATGTCCAAAAAATCCGGTGGATATAAAAAAGTTGACAATAAAAAAGGTAGCACTGGAAATCAGTTTTGTAATGGACAGCATTTGGCTTTAGATGAAGGAGATGTTCGTGCTATGCTTGACCAATTTATGTGCATGCAAGATGAGAATCCTAATTTCTTTTATGCTATAGATCTGAATGAAGAGAAGCAATTGAGGAATCTTTTCTGGGTTGATGCAAAAAGTAGGCTCGATTATAGACACTTTGGCGATGTGATTCTTCTTGACACCACACATATCAAGAATGAATATAAGCTGCCCTTTGTCCCCTTTATTGGAGTGAATCACCACTTTCAGTTCCTGTTGCTGGGATGTGCAATTGTGTCTGACGAGTCTAAATCAACGTATATGTGGCTGATGCAGGTGTGGCTTAGGGCAATGGGTGGACAAGGTCCAAAGGTAATACTTACAGACCAAGAAAAAGCTTTAAAAGAAGCTGTTGCTGAAGTGCTTCCTGGATCTCGtcattgtttttgtttgtggCATATCCTGAATTCAATCTATGTGATGACAACTGGTTATGCTCAATTTATGAGGACCAGGAAAACTACATTGAAAGAATTTTTAGAGCAATACAAAGTGACATTACGAGGGAAATGTGAAGAGGAAGCAAAAGCAGATTTTGAAACTTTCCATAAACAACCAGCATTAAAATCCCCTTCACCTTTTGGGAAACAAATGGTTTCTTTGTACACACACGCAATATTTAAGAAATTCCAGAGTGAGGTCTTAGGAGTTGTTGCTTGTCATCCAAAACTAGAAAGTGAAGATGGACCAACAAAAATGTTTAGAGTTCAAGATTTTGAAgataatcaaaattttattgtcTCGTGGAATGAAATGACATCTGATACATTTTGTTCATGCCGGTTGTTTGAATTCAATGGTTTTCTTTGTAGGCATGTAATGATTGTTCTACAAATTTCTGGTGTACACAACATCCCATCTCAATATATACTGAATCGATGGACAAAAGATGCAAAGAATAGACATATGGAAAGAGAGGTGTTAGAGATGGCGGATTCTAGGAGTAAGCGCTATAATAATCTATGCCAACGAGCCCTTGAACTGGGTGATGAAGGGTCTTTATCTCAAGAGAGTTACATTGTTGCTGTGAATGCACTGGAAGAAGCTTTGAGAAAGTGTGAGAGCATGAATAACTCTGTTCAGAGTGTCATGGAACCAAGCTTGCCAATTCTCAGTTCTCAAGATGTGAATACCACCGGTGATACGATCGAAAAGAACAGTAATATGAAGAAAAGACAGgtaCACTCAGAGCCAGAGATCAATGCTATTGCAATTGACAGCAGCTGGCAGCAAATGGCAAACTCTAATACACGAGCGGCAGGCTTTGATTGTTCTTATGAGTCACAGCAGAGCATTCAAGAGATGGATCAGCTGAACTCAAGAGCTCAGAACTTGGATGGCTATTTTGCCACTCAACAGATTGTTTCAGGAATGGGACAACTGAACTCAATAGCTACTAACCATAACGATTATTACAGCGACCATCATAGCATCCAAGGCCTAGGACAATTGAACTCAATTGCGCCTATCCATGATGCCCACTACATGACTCCACAAAGGGTGCATGGGATGGTATGTGATACTGCTATTCTAGCTGAGTTACATTTCAGACAAGAAACAATCCCCAGTTGTTTTGATGCTCAAGACAGTTTGCCAAATGTGGATCAATCCCCTGGAGGACCCACACAATTGCTTGGTATTGATTCAAAACAACTCAATTCAAGGCACCTTTCTCGTTAG 2532 0.3922 MGIDLEHPSGEYHKDDSRHHVVADVVDGVDKVNCRNEPTNCLEVLGNDKENAGPEINAELSVCRNKGRIEQGINLNSSKISEPHDGMEFDSKEDAFSYYKEYAKSVGFSAIIKASRRSRISGKFIDAKFACTRYGNKREPSAAETLDSLSYTDNMPTLPSTPVKRKRGRVNLSWAKTDCKACMHVKRRQDGRWVICSFIKDHNHEILPDQAYYSRGHGNLDLVISNADALKSIRARTKKMYLTMSKKSGGYKKVDNKKGSTGNQFCNGQHLALDEGDVRAMLDQFMCMQDENPNFFYAIDLNEEKQLRNLFWVDAKSRLDYRHFGDVILLDTTHIKNEYKLPFVPFIGVNHHFQFLLLGCAIVSDESKSTYMWLMQVWLRAMGGQGPKVILTDQEKALKEAVAEVLPGSRHCFCLWHILNSIYVMTTGYAQFMRTRKTTLKEFLEQYKVTLRGKCEEEAKADFETFHKQPALKSPSPFGKQMVSLYTHAIFKKFQSEVLGVVACHPKLESEDGPTKMFRVQDFEDNQNFIVSWNEMTSDTFCSCRLFEFNGFLCRHVMIVLQISGVHNIPSQYILNRWTKDAKNRHMEREVLEMADSRSKRYNNLCQRALELGDEGSLSQESYIVAVNALEEALRKCESMNNSVQSVMEPSLPILSSQDVNTTGDTIEKNSNMKKRQVHSEPEINAIAIDSSWQQMANSNTRAAGFDCSYESQQSIQEMDQLNSRAQNLDGYFATQQIVSGMGQLNSIATNHNDYYSDHHSIQGLGQLNSIAPIHDAHYMTPQRVHGMVCDTAILAELHFRQETIPSCFDAQDSLPNVDQSPGGPTQLLGIDSKQLNSRHLSR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2398 843 ProSiteProfiles Zinc finger SWIM-type profile. 529 565 IPR007527 GO:0008270
Sto7g2398 843 Pfam SWIM zinc finger 538 561 IPR007527 GO:0008270
Sto7g2398 843 MobiDBLite consensus disorder prediction 813 843 - -
Sto7g2398 843 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 434 713 - -
Sto7g2398 843 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 74 422 - -
Sto7g2398 843 SMART 26again6 540 567 IPR006564 GO:0008270
Sto7g2398 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 434 713 IPR031052 GO:0006355
Sto7g2398 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 74 422 IPR031052 GO:0006355
Sto7g2398 843 Pfam MULE transposase domain 327 420 IPR018289 -
Sto7g2398 843 Pfam FAR1 DNA-binding domain 97 208 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2398 Sto-Chr7 29525567 29529040 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto7g2398 FAR1 2.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2398 - - qsu:112004155 605.52