Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2396 ATGGCTTTGAGGATGATAGCAATCTCAGTGGTTTCTACATTGTTAAGCTTTGTGGGTGTACAATTTGGTTCAGAACtatcattcaataaaataaGATCAGATGGACTAATTGGCAAGAGTTTAATTCATTTGGAGAATGAGAATTCCAGCCATGTcattgagttgcttttggggtcGTACACCTCCATTGGGTTACTGGTAAATTTTGTGATCAATGCATTTGTTCTCCTCAATCTTTGTCTCAAGACCATATTTTTCTCGGAGTTGTATCCTGCTGAAACTCGGAAGCTGGTTGAGCATCTCATTAATTATGTCATCTACAAGGGGATGTTCCTACCACTGATAGTGCCTTCAACAATATATCAGGCTGGTCTGTGGTCTTCCTGGATGATAGTGCTATGTTCTTTAAAGATGTTTCAAGCTTTGGCCAGAGATCGTTTAGAGCGTTTAAATGCATCACCGTCTGCTAGACCCTGGACATATGGTCGTGTATATTCTGCATTATTATTGGTTTTCTTGGTTGATGTATTTTGGATAAGGCTATGTCTGGTGATATATAAAACATACCGATCCTCTATGCTTTTGTTGCTATTCTATGAGCCTTTCAGTATTGCTTTTGAAACCTTACAGGCTCTTTTGGTACATGGATTTCAATTTCTTGATATATGGCTTCATCATTCAGCATGCAACAACACTGATAGTCGGAGGTCAAAATTGTTTGACACATTAGCAGCAGGATCATTAATGGAATGGAAGGGGAGTCTCATTCGGAATTTGGGATTTTTGCTAGACATGGGAACTTCTTTAATGTCACTTGGCCATTACTTGCATATTTGGTGGCTTCATGGCATGGCTTTCCATCTTGTTGATGCAGTGCTATTTTTAAACATACGAGCACTGCTAAGTGCAATTGTAAGTCGCATAAAGAGCTTTATCAGGTTGAGGAAAGCTCTTGGTGCACTTCATGCAGCACTTCCTGATGCAACATCAGAGGAGCTACAAGCATATGATGATGAATGTGCAATTTGCAGGGAGCCCATGGCCAAGGCTAAAAAGCTAAAGTGCAAACACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTGGATCAAGGTTTGACTGAGATATATACTTGTCCGACATGTCGAAAGCCACTTTTTGTTGCTTGGCCTGAAAATGAAGTAAACCTCAATGCACGGGAAATATCAAATGAAGGACAGCATGCACGCAATGTAAGTGCAGGGCTTGATCGGTCAAACACTGGTAGACATACCATGGCTGCTGGATTATATCCCAACCAGAGGCTGAACTCTATGGAAGGCGTTCCTTGGAGAGGTTCAGGACTGGACTCAACTTGGTTGCATTCTTGGCCAAATCAAGGCGTTGACGGGGCTGGTCCATCTACTGCAATGAGATCAGTTGGAATAGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGAGTGCCCTTGAAGATACTTCGTGGAACCTTTGGCCCATTGATCCTTCTCATGCTTCTTCAAGTGGGTCACCTGTTCCTCCTTCTCATAGAAGATTCGGTGGAGGCTCTGGTAGTCCACATATGAGAACTGCCTCGCGTTATGCAAATGATAATCTGGCAAATATACTTGCTATGGCTGAGACTGTTCGTGATGTTCTACCTCATATACACGATGATGTAATTTTCCAGGACTTGCAGAGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTGCAAATGTGA 1767 0.4114 MALRMIAISVVSTLLSFVGVQFGSELSFNKIRSDGLIGKSLIHLENENSSHVIELLLGSYTSIGLLVNFVINAFVLLNLCLKTIFFSELYPAETRKLVEHLINYVIYKGMFLPLIVPSTIYQAGLWSSWMIVLCSLKMFQALARDRLERLNASPSARPWTYGRVYSALLLVFLVDVFWIRLCLVIYKTYRSSMLLLLFYEPFSIAFETLQALLVHGFQFLDIWLHHSACNNTDSRRSKLFDTLAAGSLMEWKGSLIRNLGFLLDMGTSLMSLGHYLHIWWLHGMAFHLVDAVLFLNIRALLSAIVSRIKSFIRLRKALGALHAALPDATSEELQAYDDECAICREPMAKAKKLKCKHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVAWPENEVNLNAREISNEGQHARNVSAGLDRSNTGRHTMAAGLYPNQRLNSMEGVPWRGSGLDSTWLHSWPNQGVDGAGPSTAMRSVGIGRVQMMMRHLASVGETYAQSALEDTSWNLWPIDPSHASSSGSPVPPSHRRFGGGSGSPHMRTASRYANDNLANILAMAETVRDVLPHIHDDVIFQDLQRTNSVSVTVNNLLQM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2396 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 388 IPR013083 -
Sto7g2396 588 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 588 - -
Sto7g2396 588 Pfam Ring finger domain 338 382 IPR001841 -
Sto7g2396 588 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Sto7g2396 588 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 588 - -
Sto7g2396 588 SUPERFAMILY RING/U-box 326 390 - -
Sto7g2396 588 Pfam CUE domain 552 588 IPR003892 GO:0043130
Sto7g2396 588 Gene3D - 547 587 - -
Sto7g2396 588 MobiDBLite consensus disorder prediction 511 538 - -
Sto7g2396 588 ProSiteProfiles CUE domain profile. 548 588 IPR003892 GO:0043130
Sto7g2396 588 SMART ring_2 340 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2396 Sto-Chr7 29505198 29511656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2396 71 423 C3H Transcription Factor Family AT3G16090 26.494 7.03e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2396 K10636 - gmx:100819656 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2396 7 29505198 29511656 Sto7g2396 7 29505198 29511656 ECH