Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2356 ATGCCATTGGTAGCATGGCTGCACCAAGAAGCCAAGTGTAAGAAATTGAACCAAATGGTTAAGTTAACTCATGGGGCTTATGATAATGAAGAAGATGCAGCTCGTACTTATGATCTTGCTGCCCTTAAATATTGGGGGAGAGATTCAACGTTGAATTTTCCgaTCGAAACATATTCCAAGGAGCTTGAGGAAATGGAGAAGGTCACAAAAGAAGAGTATTTAGCTTCATTGCGGAGACAAAGCAGTGGATTTTCGCGAGGTGTTTCTAAGTATCGAGGAGTTGCTCGGCATCACCATAATGGCCGATGGGAAGCTCGAATTGGAAGAGTACTAGGCAACAAGTATCTCTACTTGGGGACATATAGCACTCAGGAGGAGGCAGCTATGGCATATGACGTGGCAGCCATACAGTACAGAGGAGCAAATGCAGTGACGAATTTCGACATTAGCAACTACATGGACAAGATTACccagaagaagacgaagaaagAAGAATCCCAAGAcgaagcagaagaagaagaaacagttATCACTGCAAcatcacaacaacaacaacaacaagaaGCTCATCCcaattcttcctcttcatccttCGAATCCCAAACTCTGCAGATCCAACAAGAACATGAAATCAAGCCTGAGAACCCCCAAATTCAAATCACCCACCAAACCCCTCAATCCCCACCGGTCCCTCCTCCAACTACTGATGAACCCGAGCTCCCATGGATCTTCATGGACGACGAGGCGTTCTCCCAATTCCAAGTCCCGGCTCTGCCCGACGGCGATTTGCTCGACATGTTCAACGGCGGCGGCGGGAAATTCGAGGACGACGACATCGATTACCTGTTCAGTGCAGAAGCCGAAGGGGTGGATTTCGATCTGGACAAGATTCTGAAAGGGGATGATGATGACTGTGGAGCGGAAGCGGAGAAGTTGATAATTCAGGAAACTTCACTGTTGCTTCTTCTGAAGGATAAGATTGATGCACCTTTTGTAGTCCTCTCAAGGAAAACCTTTAAAGAGATTTTATCAATTATCATTCATTTTGTCGTCATGGATGTTGAAGCAGTCGATGAAGGAGAAAACAGTGATAAGTGCGCAGCAGAAAATGTTGAACCTGATAATGGCCATGGACAGAATGTAACTGTAAACTTGGTTGAAAGAGAAGTAATTAATCATGGTGGTTATGCAAGTTTAAAACCGCAAGTCGGTATGCTTTTTGAAACAGAAGATGCTGCAAGATCATTTTATGATGCATATGCAAGGCGCGAGGGCTTTAGCACTCATGTTGGTCAGTTCAGTCGTACGAAGCCTGATGGTCCAATTGTAACTTGGGACTTTTCTTGTACTAGGGAGGTATATAAAAGGAAGAACATAGAAAGTTGTAATGCAATGCTCAGAATAGAGAGTAAAGATGCAAACAGCTGGGCTGTGACAAAATTTGTTGAGGACCATAACCATTCCCTGGCATCCCCTAATAAGGTGCAATACCTTCGACCCCGTAGGCATTTTGCAGGTGCTACAAGGAATGCTTCTGAGACATTCAATGCAACTAGTGATGCCTATGTCTCTGCTGATGGAAATCATGTATATCATGAACCAAATCATGTAGTCAGGAGTTCTTCTCCAGTAGAACAAAATCACCTACTCAGAAACATTGGTCCACTAACATATGTGAGACCCTCTAGAAAGAGAACCCTTGGAAGAGATGCTCAAAATCttctaaattattttaagaaGATGCAAGCAGAAAACCCTGGGTTCTATTATGCTATACAGCTTGATGATGAGAACCGCTTGACCAATGTTTTCTGGGCTGATGCAAGGTCGCGAGCAGCTTATAATTACTTTGGCGATGCTGTAGTTTTTGATACAATGTATAGGCCAAATCAATACCAAGTACCATTTGCTCCCTTCACAGGAGTCAATCATCATGGTCAGATGGTTCTATTTGGTTGTGCATTACTTTTGGATGAATCAGAGTCTTCTTTTACTTGGCTGTTCAAGACATGGCTATCTGCTATGAATGATCGGGCACCTGTTTCAATAACCACAGACCAAGATAGAGCCATTCAAGCAGCTGTTGCCCAAGTCTTCCCAGAAACTCGCCACTGTATATGTAAGTGGCACATTTTGAGGGAAGGTCAAGAAAGATTGGCTCATATTTACCTAGCTCATCCTTCCTTTTACGGGGAGCTTTATAGCTGCATCAATTTCTCTGAGACTGTTGAGGACTTTGAATCAACATGGCAGTCTCTCCTAGATAAGTATTATCTACAGAAAAATGACTGGCTTCAGGCTGTGTATAATGCTCGCAAACAGTGGGCTCCTGTTTATTTTCGTGGCACATTCTTTGCGGCACTTACTTCAAACCATGGGGTTAGCTCCTTTTTTGACGGCTATGTGAATCAACAGACAACCTTACCTTTATTCTTTAAGCAGTATGAAAGAGCTCTGGAAGATTCaatggaaaaagaagtagaagctGATTATGATACAAATTGCACCACCCCAGTGTTGAAGACTCCATCACCAATGGAACAACAGGCTGCAAATCTATACACAAAGAAGATATTTGCAAAGTTTCAGGATGAACTGGTGGAAACTTTCGTGTATACTGCAGATAATATTGAGAGTGATGGTGTGGTCAGTAAATACAGGGTTGCAAAATATGAACATGATTACAAGGCATACATGGTCACTTTAGATGTTTCTGAATTGAAAGCAAATTGCAGCTGTCAGATGTTTGAATACTCAGGCATCCTTTGTAGGCATATTTTGACTGTATTTACTGTCACAAATGTTCTTACCCTTCCACCGCACTACATTTTGAAGCGATGGACGAGGAATGCAAAAAACAGTTTTCAATCAGATGATCAAATTCCAGATCCACACAACATTGAAAGTCTCAGCTTGCGTTTTAATAGTTTATGTCGAGAAGCCATTAAACTTGCTGAAGATGGAGCAATAGCTGTGGAGACTTATAATGCAGCAATCAATGCTTTAAGAGAGGGTGGGAAAAAGGTTGCTGCTGTGAAGAAAAATGTTGCAAAAATCACACCCCCAACTCAGGGTAATGGAAGTAGTCAGGAAGACCATAGCAAGAAGAGCCCTTCCTCAATTTGGCAAGACTCTGTGTCACATCGCTTTAATCTTAATGACATTGGGCTTCCTGTTGCTGACCTGAATCAGCCTAGTATGGCTCCTGTTTCTATTCACCGTGATGGTGGCCCTTCTGATAGTCCTGTTGTCCTTATTTATTTCAAGTCTATGACTTGGGTCATTGAAAATAAGAATTCAACCTCTGCCGGTAAAGTTGCAGTGATTAACTTGAAGCTGCAAGATTATGGCAAGAACCCACCAGCAGAGACCGAAGTGCAATTTAGAGTAACAAGGGTCACTTTGGAGCCTATGATAAGATCAATGGCTTATATCAGTCAGCAACTCTCTACACCAGTCAATAGAGTTGCTGTCATCAATCTGAAGCTCCAGGATACAAAGACTAGTACAGGGGAAACAGAAGTGAAATTCCAAGTTTCCCGGGATACACTAGGTTCCATGCTTAGGTCAATGACCTGCATCCGTGAGCAGCTATGA 3597 0.4128 MPLVAWLHQEAKCKKLNQMVKLTHGAYDNEEDAARTYDLAALKYWGRDSTLNFPIETYSKELEEMEKVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTYSTQEEAAMAYDVAAIQYRGANAVTNFDISNYMDKITQKKTKKEESQDEAEEEETVITATSQQQQQQEAHPNSSSSSFESQTLQIQQEHEIKPENPQIQITHQTPQSPPVPPPTTDEPELPWIFMDDEAFSQFQVPALPDGDLLDMFNGGGGKFEDDDIDYLFSAEAEGVDFDLDKILKGDDDDCGAEAEKLIIQETSLLLLLKDKIDAPFVVLSRKTFKEILSIIIHFVVMDVEAVDEGENSDKCAAENVEPDNGHGQNVTVNLVEREVINHGGYASLKPQVGMLFETEDAARSFYDAYARREGFSTHVGQFSRTKPDGPIVTWDFSCTREVYKRKNIESCNAMLRIESKDANSWAVTKFVEDHNHSLASPNKVQYLRPRRHFAGATRNASETFNATSDAYVSADGNHVYHEPNHVVRSSSPVEQNHLLRNIGPLTYVRPSRKRTLGRDAQNLLNYFKKMQAENPGFYYAIQLDDENRLTNVFWADARSRAAYNYFGDAVVFDTMYRPNQYQVPFAPFTGVNHHGQMVLFGCALLLDESESSFTWLFKTWLSAMNDRAPVSITTDQDRAIQAAVAQVFPETRHCICKWHILREGQERLAHIYLAHPSFYGELYSCINFSETVEDFESTWQSLLDKYYLQKNDWLQAVYNARKQWAPVYFRGTFFAALTSNHGVSSFFDGYVNQQTTLPLFFKQYERALEDSMEKEVEADYDTNCTTPVLKTPSPMEQQAANLYTKKIFAKFQDELVETFVYTADNIESDGVVSKYRVAKYEHDYKAYMVTLDVSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSFQSDDQIPDPHNIESLSLRFNSLCREAIKLAEDGAIAVETYNAAINALREGGKKVAAVKKNVAKITPPTQGNGSSQEDHSKKSPSSIWQDSVSHRFNLNDIGLPVADLNQPSMAPVSIHRDGGPSDSPVVLIYFKSMTWVIENKNSTSAGKVAVINLKLQDYGKNPPAETEVQFRVTRVTLEPMIRSMAYISQQLSTPVNRVAVINLKLQDTKTSTGETEVKFQVSRDTLGSMLRSMTCIREQL 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2356 1198 ProSiteProfiles Zinc finger SWIM-type profile. 898 934 IPR007527 GO:0008270
Sto7g2356 1198 SUPERFAMILY DNA-binding domain 21 56 IPR016177 GO:0003677
Sto7g2356 1198 MobiDBLite consensus disorder prediction 220 240 - -
Sto7g2356 1198 Pfam SWIM zinc finger 900 932 IPR007527 GO:0008270
Sto7g2356 1198 SMART rav1_2 6 60 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 SMART rav1_2 90 154 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 Coils Coil 149 183 - -
Sto7g2356 1198 MobiDBLite consensus disorder prediction 1017 1042 - -
Sto7g2356 1198 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 389 1142 - -
Sto7g2356 1198 SUPERFAMILY DNA-binding domain 89 150 IPR016177 GO:0003677
Sto7g2356 1198 Gene3D AP2/ERF domain 89 150 IPR036955 GO:0003700|GO:0006355
Sto7g2356 1198 Gene3D AP2/ERF domain 5 56 IPR036955 GO:0003700|GO:0006355
Sto7g2356 1198 Pfam FAR1 DNA-binding domain 415 490 IPR004330 -
Sto7g2356 1198 ProSiteProfiles AP2/ERF domain profile. 90 148 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 389 1142 IPR031052 GO:0006355
Sto7g2356 1198 SMART 26again6 909 936 IPR006564 GO:0008270
Sto7g2356 1198 CDD AP2 89 150 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 MobiDBLite consensus disorder prediction 176 206 - -
Sto7g2356 1198 ProSiteProfiles AP2/ERF domain profile. 1 54 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 Pfam MULE transposase domain 621 713 IPR018289 -
Sto7g2356 1198 MobiDBLite consensus disorder prediction 1019 1042 - -
Sto7g2356 1198 Pfam AP2 domain 89 140 IPR001471 GO:0003700|GO:0006355
Sto7g2356 1198 MobiDBLite consensus disorder prediction 159 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2356 Sto-Chr7 29154279 29169181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2356 25 189 AP2-EREBP Transcription Factor Family AT3G54320 73.333 3.82e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto7g2356 MULE 6.3e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2356 - - gmx:100789242 1379.77