Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2353 ATGGCTTCTCCAAGTCCAAAACGTTTGCCAATGGCCAGGGTTAGTGTTGGATCTAATGGCCGACAGATTCAGCTCTTGACTAACCATTTTAGGGTTCATGTGGGCAAGAAAGGTTGTTGCTTCTTTCAGTATAGTGTTGCTCTGTTCTATGAAGATGGACGCCCTGTTGAAACAAAGGGAATAGGGAGAAGAGTCATAGACAAAGTTTATGAGACATATGCTACTGAACTACAAAACAAGAACTTTGCATATGATGGAGAAAAGTGCTTATTCACTCTCAGTTCTCTCCTACGTAACAAGTTTGAATTCACTGTGGTGTTGGATGATATTTCATCAAACAAGGTGGTAAGGGGTGGAGGCCCAGACAGCCCTGATGGAAGTGACAAGAAGAGAATGAGACGTCCATCTCATACCAAAACGTTCAAGGTAGAGATAAGTTATGCTAATAAAATCCCTATGCAAGCCATTGTAGATGCATTGTATGGCCAGGAATCTGAGAAGTTCCCAGAAGCTATAAGGGTTCTGGACATTATACTAAGACATCGTGCAGCAAAGCAGGGTTACCTACTTGTACGCCAATCTTTCTTCAATGTCAACTCGAGGAGGAATTATGGAGACCTTGATCTTGGAGGCGGTGTTCGAGGTTGCCGCGGTTTTCATTCGAGCTTCCGAGCCACTCAAGGGGGTTTGACCCTCAACATTGATGTGTCTACAACACCGATTCTAGAGCCTGGTTCAGTGGTGGAGTTTCTTCTCAAGAATCAGAATGTTAGACACGCTAGCAAAATTGATTGGACCAAGGCAAAAAGGATGCTGAAAAACTTGAGGATCAAGGCAAATAACATTGAGTACAAAATCACTGGACTAAGTGATAAACCCTGCAAAGATCAGACATTTCCATTAAGACAAGGGAGGGATGCCAATGGCGAAGTGCAGTCAATTGAAGTAACAGTTCGTGAATATTTTGAACGCCATAAAAAGATACCATTGCGAGATTCAATTTATTTGCCATGCATCAATGTTGGCAAACCAAAGCGCCCATCTTATTTTCCAATGGAGCTCTGCACCTTGGTCTCATTGCAACGCTACACCAAGGCACTTACCGATTTACAAAGGGCTGCACTTGTGGAGAAGTCTAGGCAAAAGCCCCAACAACATAAGAAAGCTTTGGCTGATGTATGTTGTGAGTTCAAAAACAACTATGGCAATGAGCCTATGCTTTGCTCTTCTGGAATAACCGTCGATCCTCTGTTTACTAGAGTCGAGGGCCGTGTTCTGCAAGCCCCAAGGCTTAGTTTTGGAAATGGAGAGAACTTCCTTCCTAGAAATGGGAGGTGGAACTTCAACAATAGGAAACTAGCTATACCTGTGGAGATTAAGGATTGGGCTGTTGTAAACTTCTCAGCTGGTGATAAGGTTCATTCCCTTGTCAGGAGTCTAATGGAATGTGCAAGAATGAAAGGAGTTACAATGGATGACCCAACTGGTGTGTTTGAAGAGGAGAAAAGTATGAGATGTAAGCCTGCCCCTATCAGGGTcgagaaaatgtatgaaattgTGAAGCAGAATTTATCTGGTCGCCCGCAACTTCTGTTATGCATTCTACCACAGAGGAAGAATTCTCACATTTATGGTCCTTGGAAAAAGAGAAATCTTGTTGACGAAGGGGTTGTCACACAATGTGTTGCTCTACCAAAAATGAATAATCAGTACTTGACCAATGTTCTATTGAAAATTAATGCCAAGCTTGGAGGGATGAATTCCTTTTTGGCAATAGAGAAATCACCCTCCAACATACCTTTAGTTTCTAGGGTACCTACCTTAATTCTTGGTATGGATGTGTCACATGGCTCTCCTGGACGAGATGTGCCATCTATTGCTGCGGTTGTGAGCTCCAGGTATTGGCCATTAATTTCACAATATAGAGCTTCGGTACGAAGTCAGTCACCGAAAGTTGAGTTGATAGCAAATCTGTTTAAGCCGGGTTCTAATGGTGAGGATGATGGCATTTTCAGGGAGCTACTTGAAGACTTCATTGCAACTTCAGGATCAAGACCTGAACATATTATCATTTTCAGGGATGGGGTGAGTGAATCACAGTTCAATCAAGTCCTGAACATTGAGTTAGATCAAATCATTCAGGCATGCAAGCATTATAAAGACAATTGGAATCCAAAGTTCACTTTGATTATTGCCCAAAAGAATCATCATACTAAGTTCTTCCATGCCAGAGCAGCCAAGACTGGAGAAAATGTTCCACCTGGAACTGTAATTGACAATGGAATCTGTCATCCGAAGAACAATGACTTCTACATGTGTGCCCATACCGGCAGGATTGGGACTTCTCGGCCGACACATTACCATGTTTTATGTAACGAGATTGGATTCTCAACAGATGGCTTACAAGAACTTGTTCATTGTCTATCCTACGTATACCAGAGGAGCACAACAGCCGTATCAGTAGTTGCCCCCATTTGCTATGCCCACTTAGCAGCAGCTCAGGTAGCACAGTTTATCAAGTTTGATGAATCTTCTGAGTCTTCTTCTAGCCATGGAGGGCACACATCTGCAGGTGCACCTCACGTGCCGCCGGAGTTACCGCGTCTTCATAAAAGCGTCGCCAACTCCATGTTCTTCTGTTag 2643 0.4291 MASPSPKRLPMARVSVGSNGRQIQLLTNHFRVHVGKKGCCFFQYSVALFYEDGRPVETKGIGRRVIDKVYETYATELQNKNFAYDGEKCLFTLSSLLRNKFEFTVVLDDISSNKVVRGGGPDSPDGSDKKRMRRPSHTKTFKVEISYANKIPMQAIVDALYGQESEKFPEAIRVLDIILRHRAAKQGYLLVRQSFFNVNSRRNYGDLDLGGGVRGCRGFHSSFRATQGGLTLNIDVSTTPILEPGSVVEFLLKNQNVRHASKIDWTKAKRMLKNLRIKANNIEYKITGLSDKPCKDQTFPLRQGRDANGEVQSIEVTVREYFERHKKIPLRDSIYLPCINVGKPKRPSYFPMELCTLVSLQRYTKALTDLQRAALVEKSRQKPQQHKKALADVCCEFKNNYGNEPMLCSSGITVDPLFTRVEGRVLQAPRLSFGNGENFLPRNGRWNFNNRKLAIPVEIKDWAVVNFSAGDKVHSLVRSLMECARMKGVTMDDPTGVFEEEKSMRCKPAPIRVEKMYEIVKQNLSGRPQLLLCILPQRKNSHIYGPWKKRNLVDEGVVTQCVALPKMNNQYLTNVLLKINAKLGGMNSFLAIEKSPSNIPLVSRVPTLILGMDVSHGSPGRDVPSIAAVVSSRYWPLISQYRASVRSQSPKVELIANLFKPGSNGEDDGIFRELLEDFIATSGSRPEHIIIFRDGVSESQFNQVLNIELDQIIQACKHYKDNWNPKFTLIIAQKNHHTKFFHARAAKTGENVPPGTVIDNGICHPKNNDFYMCAHTGRIGTSRPTHYHVLCNEIGFSTDGLQELVHCLSYVYQRSTTAVSVVAPICYAHLAAAQVAQFIKFDESSESSSSHGGHTSAGAPHVPPELPRLHKSVANSMFFC 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2353 880 ProSiteProfiles PAZ domain profile. 284 359 IPR003100 GO:0005515
Sto7g2353 880 Pfam Argonaute linker 1 domain 191 241 IPR014811 -
Sto7g2353 880 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 4 879 - -
Sto7g2353 880 CDD PAZ_argonaute_like 244 358 - -
Sto7g2353 880 Pfam N-terminal domain of argonaute 21 179 IPR032474 -
Sto7g2353 880 SUPERFAMILY Ribonuclease H-like 514 838 IPR012337 -
Sto7g2353 880 SUPERFAMILY PAZ domain 239 392 IPR036085 GO:0005515
Sto7g2353 880 CDD Piwi_ago-like 411 839 IPR045246 -
Sto7g2353 880 Gene3D paz domain 239 363 - -
Sto7g2353 880 ProSiteProfiles Piwi domain profile. 530 840 IPR003165 GO:0003676
Sto7g2353 880 SMART DUF1785_2 189 244 IPR014811 -
Sto7g2353 880 SMART Piwi_a_2 530 840 IPR003165 GO:0003676
Sto7g2353 880 Gene3D - 425 591 - -
Sto7g2353 880 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 4 879 - -
Sto7g2353 880 MobiDBLite consensus disorder prediction 846 867 - -
Sto7g2353 880 MobiDBLite consensus disorder prediction 115 137 - -
Sto7g2353 880 Gene3D - 598 880 IPR036397 GO:0003676
Sto7g2353 880 Pfam Piwi domain 531 840 IPR003165 GO:0003676
Sto7g2353 880 Pfam PAZ domain 249 375 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2353 Sto-Chr7 29122976 29129105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2353 13 880 Eukaryotic Initiation Factors Gene Family AT5G43810 34.211 1.48e-141 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2353 K11593 - csin:114304184 1141.33