Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2336 ATGTACACAGAGGCAATGAAGAAAAACCAAATTTACAATGGAGAAACTTGTCCATACTGGCTTGCTGGGAGATGCACAAGAAATCCTTGCAAGTTCTTGCACAAAATAACTCCATCAGCTATTaatccacatcatcatcatcatcatcatcaacattaCTCTGCTCAAACAACACACATGTTGAATGCAAAGAACGTACCaacaatgaagaagaagaataatggAGGGGATGAACCAATTTCCACTAATGCCCCTCAGAAAAAGCCATCACAAAGTATATGTAAATATTGGATGAATGGAAATTGCCGACATGGTGATCAATGTTGGAACTTGCACGCTTGGTCTCATGGCAAAGGCTTTTCACCACTTGCAAAGTTACATCAACACAAAAAGACAATTACTGGGATTACACTACCAAATGGAACAGACAAGCTTTTCTCTTGTAGTACAGATGGGACAGTTCGGTTATGGAACTGCCATACTGGTCAATGTGCTGATATGACCAATGTGGGTTCTGAAGTCAAGTCTTTGATTAGTGCAGGGCCATGGGTTTTTGCTGGTGTATCAAATGCTATTAaaGCTTGGAATATTGAGACAAATGTACAACATACTCTTAATGGACCTAAGGGTCAAGTTCTTGCCATGGCAGCAGGAACTAATACACTTTATGGTGCAGCAGAGGATGGTGCTATATATGTATGGAAAAATACTTCTGAAGCACAGTCTCCATTTGAACCTGTTGTTTCATTAATTGGCCACACTAAGGCTGTGGTCTCCCTAGCTTTTGGAGCAGATCACAAGATATTGTTCTCAGGTTCCATGGATCATAGTATAAAGGTTTGGGACCTTGACACATTACAATGTACAATGACACTAAAAGCACACAAAGACATGGTGACATCCCTTATTTGTTGGGGGCCATATTTGTTATCAAGCTCTTTGGATGGCACAATTAAGGTGTGGGGTGCCACTGATGCCAAAACTTTTGAAgtaatatatacacacaatgaAGAACATGGTGTTATTGCAATAAACGGAACATCTGATTTAGAAGGAAAACCCATTTTGTTTTCTTCTCGTAAAGACAATTCTGTTGGCATATATGAAATTCCATCGTTTTCTGAAAGGGGTCGATTATTCTCAAAGCACGAAGTTCAGACAGTTCAAGTAGCTCCTGGTGGTCTCATTTTCACAGGAGATAAGGCTGGTTTGTTGAAGGTTTGGAAATTGTTAGCAAATCCTGAGCCCAAGATTGCATCTTCATGA 1266 0.3791 MYTEAMKKNQIYNGETCPYWLAGRCTRNPCKFLHKITPSAINPHHHHHHHQHYSAQTTHMLNAKNVPTMKKKNNGGDEPISTNAPQKKPSQSICKYWMNGNCRHGDQCWNLHAWSHGKGFSPLAKLHQHKKTITGITLPNGTDKLFSCSTDGTVRLWNCHTGQCADMTNVGSEVKSLISAGPWVFAGVSNAIKAWNIETNVQHTLNGPKGQVLAMAAGTNTLYGAAEDGAIYVWKNTSEAQSPFEPVVSLIGHTKAVVSLAFGADHKILFSGSMDHSIKVWDLDTLQCTMTLKAHKDMVTSLICWGPYLLSSSLDGTIKVWGATDAKTFEVIYTHNEEHGVIAINGTSDLEGKPILFSSRKDNSVGIYEIPSFSERGRLFSKHEVQTVQVAPGGLIFTGDKAGLLKVWKLLANPEPKIASS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2336 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Sto7g2336 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 126 158 - -
Sto7g2336 421 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 10 414 - -
Sto7g2336 421 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Sto7g2336 421 MobiDBLite consensus disorder prediction 67 87 - -
Sto7g2336 421 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Sto7g2336 421 Gene3D - 117 298 IPR015943 GO:0005515
Sto7g2336 421 Gene3D - 299 421 IPR015943 GO:0005515
Sto7g2336 421 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Sto7g2336 421 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Sto7g2336 421 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Sto7g2336 421 CDD WD40 129 409 - -
Sto7g2336 421 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Sto7g2336 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 167 IPR001680 GO:0005515
Sto7g2336 421 SMART WD40_4 119 158 IPR001680 GO:0005515
Sto7g2336 421 SMART WD40_4 372 409 IPR001680 GO:0005515
Sto7g2336 421 SMART WD40_4 243 282 IPR001680 GO:0005515
Sto7g2336 421 SMART WD40_4 285 322 IPR001680 GO:0005515
Sto7g2336 421 SMART WD40_4 198 235 IPR001680 GO:0005515
Sto7g2336 421 Gene3D - 10 116 - -
Sto7g2336 421 PRINTS G protein beta WD-40 repeat signature 145 159 IPR020472 -
Sto7g2336 421 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Sto7g2336 421 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Sto7g2336 421 PANTHER - 10 414 IPR044715 -
Sto7g2336 421 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Sto7g2336 421 Pfam WD domain, G-beta repeat 121 158 IPR001680 GO:0005515
Sto7g2336 421 Pfam WD domain, G-beta repeat 287 321 IPR001680 GO:0005515
Sto7g2336 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 331 IPR001680 GO:0005515
Sto7g2336 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Sto7g2336 421 SUPERFAMILY WD40 repeat-like 111 410 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2336 Sto-Chr7 28913302 28916319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2336 219 410 Miscellaneous Gene Families AT5G08390 27.363 1.11e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto7g2336 WD40 3.5e-07 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2336 - - gmx:100799617 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2336 7 28913302 28916319 Sto7g2336 7 28913302 28916319 ECH