Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2312 ttGCGGAACGATTTTCAAACGCATCGTGAGAGCCATCGTACTCGTACTCGCGGTGTCCGTCGTGTGGAGAGGCCGTCGTCCGCCGCAGCCAGAGCCGGTTCCTTCGTCGTCTCCGTCTCCGTCCGCGTCAGGTGCCGTGTGGAAGCCGTTTTCTTCCGGAAGCAGCGTGTTCCTCCATTTTTTCCGACCAAAGTTTCTGAAATGTGCCATACTGCGGAGCCTAAACTTTGTTATAGACAATTCATCTACTTTGATTCATATGGGCCTGTTGAAACAATACAAGAGGTTACTTATTCTACAACTCCATCTGCTAATGATAACATGGATAAGGAATTTGGAAAATTTACGTTGGCAAAAGACTTGGCCTGTCTTGTTGAGGAATCTTCTAAAGTTGTTGAAAGAAAAACACGAAGTCGAATGGAGCTCAAGAGATTGCTTGAACACCGTATAAAAAAGAGGGCCAAGGAGCAATATGTAAATGGGAAATTTCAAGACTTAATGGCAAAAGTCATTTACAATCGAGAAACTCTTCAGGATGCTCATAATTGTCTTAGGCTAAACTCAAATGTTGGTGTGGATTTAAATTATGACAACTCTTTTAATACCATGGTAGAAGAGCTTTGCCATGGGAGTTTTGATGTCAATGCCAATACCTTTTCTATTTCAACAAGAGGTGTGAACAAAGAAGTTCTAGTCCTTCCCAATTTAAAGTTGAAGGTTCTCCAAGAAGCCATCAGGATAGCTTTGGAAGTTGTTTACAGACCACACTTCTCTAAAATTTCACATGGTTGTCGAAGTGGAAGGGGGCACTCCACAGCTTTGAAGTACATCTGCAAAAGGGTCTTGGATCCTGACTGGTGGTTCACTTTGCTCATAACCAAAAAGGTGGATGCTTCTGTCTTAACTAAGCTCTTCTCAGTAATGGAGGACAAAATAGAAGACCCAAATTTATATGCTATGATCTGGAGCATGTTTGATGCCCAGGTACTAAATTTTGAGTTTGGGGGTTTCCCAAAGGGCCATGGTCTCCCACAAGAAGGGGTTTTATCCCCTATTCTAATGAACATATATCTTGACCTCTTTGATCGTGAATTTTACAGGTTGTCAATGAAATATGAAGCTATTGATGGTGGAAGTTGTAATGATCAAGATAAATCTGGCTCCAAGTTGCGCAGCTGGTTCAGGAGACAGTTGAAAGGTAATGACCCTAAGTGTGTAGTTGATGGGAATAATGGTCCCAAAGTCTATACTTGTCGGTTTATGGACGAAATGGTTTTTGCAATTTCTGGCTCCAAAGATTCTGCTGTTAATTTGAAGTCTGAGATCCAAAGTTATTTGAAGAACTCTTTGCTCTTGGATGTGGATGATCCAACAGATATAATGCCTTGTGAGGGGCctgaaaatattcattttttgggaAGTTTGGTCAGAAGAAATGTTAGAGAGAGTCCTGCTGTTAAAGCTGTTCACAAGTTAAAGGAAAAAGTAGAGCTATTTACCTTACAAAGGCAAGATGCTTGGAATTATGGGACAACTAGAATTGGGAAGAAATGGCTGGGCCATGGTTTGAAGAAGGTTAAAGAATCAGAAATCAAGCATTTAGCTAGTAGTAGCTCTATCCTCAACAGTATTTCCTGTTTCCGTAAATCTGGAATGGAAACTGACCATTGGTATAAGCACTTATTGAAGATATGGATGCAAGGTGTTCAAGCTAAAAATGCTGATAGTGAAGAAGTAATTCTATCTAAGTATGTTGCAGAACCATCTCTACCACAAGAGCTTAAGGATTCCTATTATGAATTCCTGAAACAGGCAGATAAGTATATATCTTCTGAGACAGCTTCTACTCTTCAGCTTTTGCCAAATAGTAATGTCTCAACAGAAcctgaaattaaaaaaacagaGATTATTGCTCCTATCTGTGCCATAAAAAAACGTCTCCTGCGATATGGATTAGTTACGTCCCACGGATATCCCCGGTCCAATTCTTCACTTATCTTGCAAGATACAAATGAAATAATTGACTGGTTTTCAGGGATTGTTCGGCGCTGGTTGAGATGGTATGACAATTGTGTTAATTTTAATGAGGTAAAGCTTCTGATTTCCGATCAAGTTAGGAAATCTTGCATCCGTACTTTAGCAGCAAAGTATCGGTTACATGAAACTGAGATAGAAAAGCGGTTTGACCTAGAACTCAGCAGACTTCCATCAACTCAGGATATAGAGAATGAAATGACAAATGAAGCTTTGGATGTTGAAGCTTTTGATAATGATGAGGCATTAATGTATGGAATTTCCTACAGCGGTTTGTGTCTGTTGTCTCTAGCAAGAATAGTGACGCAATCAAGACCTTGTAGTTGTTTTGTAATTGGGTGCTCATCTGCGGCACCAAGTGTATATACTCTTCACGTTATGGAAAGACAGAAGTTTCCAAGCTGGAAGACTGGGTTTTCAACTTGCATTCATCCAAGCTTAAATAAACGGCGAATTGGGTTGTGTAAGCAGCATTTGAGAGACTTGTATCTTGGTCACATATCTCTTCAGTCCATTGATTTTGGTGCATGGAAGAATGGCTTCTGTACTTTGAAACAGGACCATGGTTTCTCAGCTATGGCTGGCTATGCACAGATGCCTGGTCCCAATCTTTCCTTTTGGTTCCTCAACTGTTTCTGGGTTCTCTCTAACTGGTTCCAACCATTAGATACGCTTCGGGATGGTGACTGTGATTGTCTACTTCCTCTTGGAGTGGGAACTGGGTTTCGAAACCCTATTGCAGATTTGGTGGTGCCTCCTTGGGGAATTCTTCTGCAATATGAGCTACAACACTTGATCTCACTAAAGCAAGCTGAGGAGCACTTGGAGCACCTGGTTCCATTTCTAGAGATGGAAATAGAGGCGTTGCCGGAGGTGTTTTCAACCTTGTGTTGCACTTATGTTACATGCAAGTTCCTACGCCGAAAATGCCAACCGGAGTGCGTGTTCGCGCCCTACTTCCCCTCGGATCAGCCGCAGAAGTTCGCCAATGTTCACAGGGTCTTCGGAGCGAGCAACGTCACCAAACTTCTCAACGACTTGCCGCCTCACCAGAGGGAAGACGCCGCCAACTCCCTCGCCTACGAGGCCGACATGCGCTTCCGGGACCCGGTCTACGGCTGCGTGGGCGTCATCTCCCTCCTCCAAAACCACCTCAAACAACTCCAACTCGACCTGGCCGTAGCCAGATCCGAGCTCTCTAAGTACCAAACAACCTGTGGTGGGCTCCTAgctgctgctactactactgccaccaccaccactgtcACCACCCGTCATCCCCACGTGCAAAACGTGGGGATAATGAATGTGATTGGTGGGCCCGCAGGCGGGATACATGATCCTAGTCAGAACCACCACTATCACTATCACTATCATCGCGAAGAGATGTTTAATTATGAGGCAAATGTTTTGGCTATGAATTATGTGTCTGGAAGCAAAGGACAAGTCATGGATCATCAAATCCAGCACTATGGTGATGTGGGTGGAGATGATCCTCACCATATCTATCTCTCTTAG 3552 0.4237 LRNDFQTHRESHRTRTRGVRRVERPSSAAARAGSFVVSVSVRVRCRVEAVFFRKQRVPPFFPTKVSEMCHTAEPKLCYRQFIYFDSYGPVETIQEVTYSTTPSANDNMDKEFGKFTLAKDLACLVEESSKVVERKTRSRMELKRLLEHRIKKRAKEQYVNGKFQDLMAKVIYNRETLQDAHNCLRLNSNVGVDLNYDNSFNTMVEELCHGSFDVNANTFSISTRGVNKEVLVLPNLKLKVLQEAIRIALEVVYRPHFSKISHGCRSGRGHSTALKYICKRVLDPDWWFTLLITKKVDASVLTKLFSVMEDKIEDPNLYAMIWSMFDAQVLNFEFGGFPKGHGLPQEGVLSPILMNIYLDLFDREFYRLSMKYEAIDGGSCNDQDKSGSKLRSWFRRQLKGNDPKCVVDGNNGPKVYTCRFMDEMVFAISGSKDSAVNLKSEIQSYLKNSLLLDVDDPTDIMPCEGPENIHFLGSLVRRNVRESPAVKAVHKLKEKVELFTLQRQDAWNYGTTRIGKKWLGHGLKKVKESEIKHLASSSSILNSISCFRKSGMETDHWYKHLLKIWMQGVQAKNADSEEVILSKYVAEPSLPQELKDSYYEFLKQADKYISSETASTLQLLPNSNVSTEPEIKKTEIIAPICAIKKRLLRYGLVTSHGYPRSNSSLILQDTNEIIDWFSGIVRRWLRWYDNCVNFNEVKLLISDQVRKSCIRTLAAKYRLHETEIEKRFDLELSRLPSTQDIENEMTNEALDVEAFDNDEALMYGISYSGLCLLSLARIVTQSRPCSCFVIGCSSAAPSVYTLHVMERQKFPSWKTGFSTCIHPSLNKRRIGLCKQHLRDLYLGHISLQSIDFGAWKNGFCTLKQDHGFSAMAGYAQMPGPNLSFWFLNCFWVLSNWFQPLDTLRDGDCDCLLPLGVGTGFRNPIADLVVPPWGILLQYELQHLISLKQAEEHLEHLVPFLEMEIEALPEVFSTLCCTYVTCKFLRRKCQPECVFAPYFPSDQPQKFANVHRVFGASNVTKLLNDLPPHQREDAANSLAYEADMRFRDPVYGCVGVISLLQNHLKQLQLDLAVARSELSKYQTTCGGLLAAATTTATTTTVTTRHPHVQNVGIMNVIGGPAGGIHDPSQNHHYHYHYHREEMFNYEANVLAMNYVSGSKGQVMDHQIQHYGDVGGDDPHHIYLS 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2312 1183 MobiDBLite consensus disorder prediction 1 24 - -
Sto7g2312 1183 Coils Coil 1056 1083 - -
Sto7g2312 1183 Pfam Lateral organ boundaries (LOB) domain 980 1074 IPR004883 -
Sto7g2312 1183 MobiDBLite consensus disorder prediction 1 25 - -
Sto7g2312 1183 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 231 451 IPR000477 -
Sto7g2312 1183 CDD RT_G2_intron 219 473 - -
Sto7g2312 1183 SUPERFAMILY DNA/RNA polymerases 230 478 IPR043502 -
Sto7g2312 1183 Pfam Type II intron maturase 632 747 IPR024937 GO:0006397
Sto7g2312 1183 PANTHER COX1/OXI3 INTRON 1 PROTEIN-RELATED 88 850 - -
Sto7g2312 1183 PANTHER COX1/OXI3 INTRON 1 PROTEIN-RELATED 88 850 - -
Sto7g2312 1183 ProSiteProfiles LOB domain profile. 976 1077 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2312 Sto-Chr7 28679602 28689948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2312 979 1176 AS2 family AT1G65620 54.589 7.86e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto7g2312 RVT_1 3.6e-11 CL0027