Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2298 ATGAGTCCTCCTGAGGTGATGAAGATGGTTGACGGGGAACACGGTGATGCCATTGAGTCTAGATTCACAGAGTTCTGCAAGAATGGACTATCATTGGATGAGAAAAGTTTTACTCAAGCAATGAAGCTGTTTGGAGAAACCAAGTGCCTTCTGCTAACAAGTACCTCATCCATTGGGAGTAAACCGCCAGAAGAAGCGGAGAGGTATTGGTTTTCATTTATTCTATACTCTGTCAAAAAATTGGCTGCCAGAAGTGCAGACAATGAAGAGGAGGCTGATTACAAGGGGTTTACCATATGCCAGTTACTGAGAGCGGCAAAGCTTAAAATTCCAGATTTTTTCAAAGAACTTCCTCAGTTTGTTGTTAagaccggtccaattttaagTACTCTATATGGCATGGATTGGGAAAACAGGCTTGAGGTGAAAGAGATGCAAGCCAATGTTGTTCACTTAGGCATTCTTAGCAAgtACTATAAACGTGCATTTGGAGAGTTCTTCGCAAATGATGCAAACACTGAAAGTCACTCATCTATCACTCTTCATGCATCCAAATACCATCGATTTGGATGGTTACTTTTCTTGGCACTTCGTGAACATGCTTTCAGCCGTTTTAGAGATTTAGTAACTTGCACCAATGGTTTAGTTTCTATCTTGGCTATATTGATTATTCACATTCCTGCTCGTTTTCGAAATTTCAACATTAATGACTCTTCACGGTTTGTTACAAAAGGTAGCAAAGGTGTAGATCTCCTTGCATCGCTTTGCATCATGTATCACACTTCAGAAGATGAGTTGAAGAAAACCATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTTTGGCATCTGAATGTGAACATGAGAATTTAGAGATTTTTGATAGAGATGGTTTGATCTATTTTAAAGATCTAATGGAGGAATCATGTCTGCCATCCAGTTTAAATAACTTGGAAAACAATTATGATTATACATTTCTTAACAAGGGTGAACTGGATGAGAGGTTGTTCATTGATGAGGAGGACAGCTTGCTAGCTTCAGGAAGTTCAATCTCCACAACTGGTGTCAAGAGAAAATTTGATTCGTTAGCATCGCCTTCCAAGACAATTACAAGTCCACTTTCTCCCTGTTGCTCTCCTGCATCCCATGCACATGGCATTCTGGGAAGTCCAAATTCCAAGACTGCAGCCACCCCTGTAAGCACTGCAATGACTACTGCAAAGTGGCTTCGCACATTCATTTCTCCACTTGCTTCTAAACCCTCACCAGATCTGGAGAGATTCCTGGCGTCATGTGATAGGGATGTTACAAGTGATGTGGTGAGCAGGGCGCAGATCATATTGCAGGCTATATTTCCAAGTAGTCCCCTAGGAGAACGATGTGTAACTAGAAGTCTCCAAAGTGCAAACCTCATGGATAATGTATGGGCAGAACAACGGAGATTGGAAGCACTGAAGTTATATTATAGGGTTTTGGAAGCAATGTGCAGAGCAGAAGCCCAAATACTGCATGTAACTAATTTAACCTCACTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCATGTGCTGCTGAACTAGTCCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCGGTATTGGAGAGGACTGGAATAACGGCTTTTGATCTTAGTAAGGTAATTGAAAGTTTCATTAGACATGAGGAATCTCTCCCAAGAGAATTGAAACGACATCTGAATTCTTTGGAAGAACGACTTTTGGAGAACATGGTTTGGGAAAAGGGTTCCTCATTGTATAATTCTTTGTCAGTTGCTAGACCTGCCCTCTGTGCAGAAATTAATCATCTTGGATTATTAGCTGAACCAATGCCATCACTAGATGCAATTGCAATACAAATTAACTTCTCTTGTGGAGGGTTGCCCCCTGTGCCTTCATTGCAGAAGCTTGAGACTTCATCAAGTCAGAACGGGGACACAAGGTCTCCAAAGAGACTCTGCACAGAGAATCGAAGCGTGGTACCAGAACGAAATTCATTCACATCACCAGTGAAGGATCGACGTCTGCCTCTCAGCAACCTTAAGGCAAGGCTACTGCAGCCTCCTTTGCAGTCTGCATTTGCCAGTCCAACAAAACCAATTCCAGGAGGGGGAGGAGAAACATGTGCAGAAACTgggattagtattttttttggcAAGATCATTAAGTTAGCAGCTGTCCGAACAAGTGGCATGGTTGAAAGGCTACAATTATCACAGGAGACACGGGAGAATGTGTTCTGTCTTTTCCAAAAAGTCCTAAATCAACATACTTCTCTCTTTTTCAACCGCCATATTGACCAAATAATTCTCTGCTGTTTCTATGCAGTAGCAAagATTTCTCAACTGAGCCTAACTTTTAAGGAAATCATTTTAAACTATAGAAAGCAACCACAATGTAAACCACAAGTTTCTCAGAGTGTATTTGTTGATTGGTCACTGGCACACCATAATGGGAGAACAGGACAGGAGCATGTTAATGTCGTTAGATTTTACAATGAAATATTCATTCCCTCTGTAAAGCCTCTACTGGATGAGCTTCGTCATGGTGGAACAACTATTAAAAGTAATAGGGTACCTGAAGTCAACAATAGAAATGATGGTCATTTAGCTCAGTGTCCTGGATCTCCCAAAATATCTTCATTTCCTAGCCTTCCCGATATTTCTCCCAAGAAAGTGTCTGCCACACGCAATGTATATGTCTCTCCATTAAAATCGTCCAAGATGGATGCTCTAATATCACAGAACTCTAAAAGCTACTACGCCTGTGTTGGGGAGAGCACTAATGCATATCAGAGCCCTTCAAAAGATCTTACTGCCATCAATAACCGTTTGAATAGCACTCGGAAGGTCCGAGGCACCCTAAACTTTGACGACATAGATGTCGGCTTGGTTAGTGACGCTATGGTCGCAAACAGCCTCAATCTTCAGAATGGCAGTAGTGATTCCCCTCAGGTTCTTGAATCTCGAGCATTAATTATAACCCAGGGGAGAAGCCCATTCAAAGTAATGGCAGCGGGCACCTCTAGCGGCAGTCCAATTTCCACAGCCGAAGAAAAGACTTCCTTGCTTGGGACCTGGCTTCCTGACCATTCCCCTGCTGCTTTTCACCCCACAAAAACAGCAAGGGTGATAATGAAACATGGGGGAAAGCTTTTCCCTAACACACCTGAATTTGCTGAATACCAGTCAGATCCTTGCAGAAATCACTCAGAAGCTGATTGCAGGCTGACCAGGTACTGTAATTATGGTGATAAGAAGGTTTAG 3309 0.4146 MSPPEVMKMVDGEHGDAIESRFTEFCKNGLSLDEKSFTQAMKLFGETKCLLLTSTSSIGSKPPEEAERYWFSFILYSVKKLAARSADNEEEADYKGFTICQLLRAAKLKIPDFFKELPQFVVKTGPILSTLYGMDWENRLEVKEMQANVVHLGILSKYYKRAFGEFFANDANTESHSSITLHASKYHRFGWLLFLALREHAFSRFRDLVTCTNGLVSILAILIIHIPARFRNFNINDSSRFVTKGSKGVDLLASLCIMYHTSEDELKKTMEKANNLIADILKKKPCLASECEHENLEIFDRDGLIYFKDLMEESCLPSSLNNLENNYDYTFLNKGELDERLFIDEEDSLLASGSSISTTGVKRKFDSLASPSKTITSPLSPCCSPASHAHGILGSPNSKTAATPVSTAMTTAKWLRTFISPLASKPSPDLERFLASCDRDVTSDVVSRAQIILQAIFPSSPLGERCVTRSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQILHVTNLTSLLTNERFHRCMLACAAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELKRHLNSLEERLLENMVWEKGSSLYNSLSVARPALCAEINHLGLLAEPMPSLDAIAIQINFSCGGLPPVPSLQKLETSSSQNGDTRSPKRLCTENRSVVPERNSFTSPVKDRRLPLSNLKARLLQPPLQSAFASPTKPIPGGGGETCAETGISIFFGKIIKLAAVRTSGMVERLQLSQETRENVFCLFQKVLNQHTSLFFNRHIDQIILCCFYAVAKISQLSLTFKEIILNYRKQPQCKPQVSQSVFVDWSLAHHNGRTGQEHVNVVRFYNEIFIPSVKPLLDELRHGGTTIKSNRVPEVNNRNDGHLAQCPGSPKISSFPSLPDISPKKVSATRNVYVSPLKSSKMDALISQNSKSYYACVGESTNAYQSPSKDLTAINNRLNSTRKVRGTLNFDDIDVGLVSDAMVANSLNLQNGSSDSPQVLESRALIITQGRSPFKVMAAGTSSGSPISTAEEKTSLLGTWLPDHSPAAFHPTKTARVIMKHGGKLFPNTPEFAEYQSDPCRNHSEADCRLTRYCNYGDKKV 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2298 1102 Pfam Retinoblastoma-associated protein A domain 403 604 IPR002720 GO:0005634|GO:0051726
Sto7g2298 1102 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 8 997 IPR028309 GO:0006357|GO:0051726
Sto7g2298 1102 Gene3D - 186 344 - -
Sto7g2298 1102 SMART DUF3452_2 80 225 IPR024599 -
Sto7g2298 1102 Gene3D - 653 878 - -
Sto7g2298 1102 Coils Coil 263 283 - -
Sto7g2298 1102 MobiDBLite consensus disorder prediction 648 664 - -
Sto7g2298 1102 SMART RB_A_2 403 604 IPR002720 GO:0005634|GO:0051726
Sto7g2298 1102 Pfam Domain of unknown function (DUF3452) 94 225 IPR024599 -
Sto7g2298 1102 Pfam Retinoblastoma-associated protein B domain 728 855 IPR002719 GO:0005634|GO:0051726
Sto7g2298 1102 PANTHER BNACNNG22930D PROTEIN 8 997 - -
Sto7g2298 1102 Gene3D - 406 594 - -
Sto7g2298 1102 SUPERFAMILY Cyclin-like 411 606 IPR036915 -
Sto7g2298 1102 MobiDBLite consensus disorder prediction 648 685 - -
Sto7g2298 1102 SUPERFAMILY Cyclin-like 726 864 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2298 Sto-Chr7 28539171 28551708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2298 14 987 Core Cell Cycle Gene Families AT3G12280 67.378 0.0 1303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Sto7g2298 RB_A 1.3e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2298 K04681 - gmx:100779266 1553.11