Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2285 ATGCTCACCCCCGCACTAGATAACACCCTCGCCATTGCTGCCCATGGTTTCGTCGGCATGTACGAGATAAAGATGGATGATGTGGGAGATGCTGTAGAAAGGCCTATTTTCAGAGATATAAGACGCTATTACTGTGAATATTGTGGCATCTGTAGGTCTAAGAAGACCTTAATAACCGCTCATATCAATACCCACCACAAGGATGAGGTGGAGAAATCAAGAGTTGATAGGGATTGTGAAGCTGATGTAAAATCCAATACTTGCAAGGAATGTGGTGCTAGCTTTAAAAAACCTGCCTACTTACTGCAACACATGCAAAGCCATTCACTTGAGGTTGGGAGACCGCCTGAGAAGCTCCATCAGGGTGCCTCGTTCACGCCCTGTTCAATGAGGTTGGCAGTTTGTTCACCCGTGTCTTGTTCTTGTCAAAGCACAATTGAGGCAAGTTACAGAAGAAAGGACCATTTGAACCGTCACCTTCTACAACACCAAGGGAAAACTTTCAAGTGTCCAATTGAGAATTGCAACCGTGACTTTGCTTTCCAAGGAAATATGACAAGACATGTCAAGGAATTCCATAACGATGATTCCACCTCTACATCTGAAGAAAGTCAGAAGCAGTATGTTTGCCCGGAAATTGGCTTTAAGCTGGACTCAGTAGAGGTGGTTTGCTTAgaacctgattgtatgaaacaTTTTTCTAATGTCCAATGCCTTCAAGAACATATCAAATCCTGCCACCAATATGTGACTTGTGAGACTTGTGGGAAAAAGCAACTGAAGAAGAATATTAAGCGGCACCTACGTATGCATGAAACTGAGGGTTCGTCAAAGGAGTTCAAATGCGAATACGAGGGTTGTGGCTGCACATTCTCAAGTAAATCCAATCTTCAGAAGCATGTTAAGGCTGTGCACTTTGAAGATAAACCCTTTGTGTGTGGCTTTCCTGATTGTGGCATGAGATTTTCTTACAAGCACGTGAGGGATAATCATGAAAAAACTGCAGCTCATGTTTACACCCCTGGGGATTTTGAAGAAGCTGATGATCAATTCAGGTCAAGGCCAAGGGGAGGACGTAAGAGAAAGTACCCTACAGTTGAAATGCTAATCAGGAAGAGAGTAACTCCTCCCAGTCAATTTGATCAGTGGTTCGTCATGAACGAGGATGAATAG 1173 0.4288 MLTPALDNTLAIAAHGFVGMYEIKMDDVGDAVERPIFRDIRRYYCEYCGICRSKKTLITAHINTHHKDEVEKSRVDRDCEADVKSNTCKECGASFKKPAYLLQHMQSHSLEVGRPPEKLHQGASFTPCSMRLAVCSPVSCSCQSTIEASYRRKDHLNRHLLQHQGKTFKCPIENCNRDFAFQGNMTRHVKEFHNDDSTSTSEESQKQYVCPEIGFKLDSVEVVCLEPDCMKHFSNVQCLQEHIKSCHQYVTCETCGKKQLKKNIKRHLRMHETEGSSKEFKCEYEGCGCTFSSKSNLQKHVKAVHFEDKPFVCGFPDCGMRFSYKHVRDNHEKTAAHVYTPGDFEEADDQFRSRPRGGRKRKYPTVEMLIRKRVTPPSQFDQWFVMNEDE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2285 390 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Sto7g2285 390 PANTHER - 30 378 - -
Sto7g2285 390 SUPERFAMILY beta-beta-alpha zinc fingers 41 108 IPR036236 -
Sto7g2285 390 Gene3D Classic Zinc Finger 134 207 - -
Sto7g2285 390 ProSitePatterns Zinc finger C2H2 type domain signature. 170 193 IPR013087 -
Sto7g2285 390 ProSitePatterns Zinc finger C2H2 type domain signature. 282 305 IPR013087 -
Sto7g2285 390 ProSitePatterns Zinc finger C2H2 type domain signature. 313 337 IPR013087 -
Sto7g2285 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Sto7g2285 390 ProSitePatterns Zinc finger C2H2 type domain signature. 224 247 IPR013087 -
Sto7g2285 390 PANTHER ZINC FINGER PROTEIN 30 378 - -
Sto7g2285 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 310 IPR013087 -
Sto7g2285 390 Pfam Zinc finger, C2H2 type 87 108 IPR013087 -
Sto7g2285 390 Pfam Zinc finger, C2H2 type 280 305 IPR013087 -
Sto7g2285 390 Pfam Zinc finger, C2H2 type 168 193 IPR013087 -
Sto7g2285 390 SUPERFAMILY beta-beta-alpha zinc fingers 149 214 IPR036236 -
Sto7g2285 390 Gene3D Classic Zinc Finger 309 334 - -
Sto7g2285 390 Gene3D Classic Zinc Finger 253 308 - -
Sto7g2285 390 Gene3D Classic Zinc Finger 30 113 - -
Sto7g2285 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 198 IPR013087 -
Sto7g2285 390 SUPERFAMILY beta-beta-alpha zinc fingers 261 315 IPR036236 -
Sto7g2285 390 SMART c2h2final6 222 247 IPR013087 -
Sto7g2285 390 SMART c2h2final6 280 305 IPR013087 -
Sto7g2285 390 SMART c2h2final6 311 337 IPR013087 -
Sto7g2285 390 SMART c2h2final6 86 108 IPR013087 -
Sto7g2285 390 SMART c2h2final6 250 271 IPR013087 -
Sto7g2285 390 SMART c2h2final6 133 163 IPR013087 -
Sto7g2285 390 SMART c2h2final6 43 65 IPR013087 -
Sto7g2285 390 SMART c2h2final6 168 193 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2285 148 340 C2H2 Transcription Factor Family AT1G72050 47.529 2.13e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto7g2285 zf-C2H2 0.0096 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2285 K09191 - gmx:100801812 501.901