Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2260 ATGGATGATTCCTTCTCCGACCACAAGCTTTGCGGCTTCCTATTTGCGGTTCTTTCCGTCACTCCGTCGCCACCCGACCCCTCTGCTAGTCTAGGTTTCAAACACCGCTGCGATATCTTCGGCGACAGTTCTGGCTCCGTCGGGTTTCGGtctcaaaacggcgtcgttttggtGCCGGTGGACTCGTTGACGAAGCAGATTGAGGGTGCGGATGCGCGTGCTTCTGATTCAGAGCAATGCAAAGTGGCGGGGAGGGATTCTGGGCTTGTGTCCGATTGTAATGGCAAGGTTACGCCTCGTGGGTTGCGGAAGAAGGGCACTGCGAGAAGAAAAAATGGTGTAGTGGCGGGGGGTGGGAGCTTGAAGAAGAGGAGGATGACGAAGATTGGGATGGTGAATGGGAGTGTTAGTGTGATTCACCAGCTTCAAGCTCTGGTTAGCCGAAAGTGCTTGAAGATTGATGCTCGAGTGATTTCGGTTGAACTTGGAGGATGTGAAGAGGCCAGAGCTGTATTACTGGTCGATGTGTACCTTCCAGTTGCATTGTGGAGTGGCTGGCAGTTTCCCAGAAATGGTTCCACGGCCGGTGCTCTGTTTCGGCATTTGAGGTGTGATTGGGGTGAGAGAAGATTAATGCTTTCCTGTTCAGACTATTGCAGGAAGACTGAGGGTGCAAGTGAGAGCATCTGGAACCTTTCTGACTGTCATGTACTTGGTTGCAAGCTCCATTACCATGTGAATGATTCTTCAAAGAATAATCTCTTTGAACTtcatgaaatttttaagaaggTACCTGGTGTAGGTAAACAGCAGAAGTCTGATAGTTCCAGGATAATACCCTTAGATAATTCTTCAAGTTCTGGGATTTGGGAGATATCTGATGACATCTTAATTAAAATTCTAGCTCCTCTTGACCCAATGGACCTTGCTAGGGTTTCTGCAACTTGTCGCCACCTAAGATCCTCGGCTGCTTCAGTAATGCCTTGTACTAAGTTAAAACTGTTCCCTCACCAGCAAGCAGCTGTTGAGTGGATGTTGCATCGCGAGCGAAATGCTGAATGCTTGGCACATCCTTTGTATGTTTCTTTTTCAACTGAGGATGGCTTTATTTTCCATGTAAATACTGTCTCTGGTGAAATAGTCATTGGGGCAGCTCCCACCATCAAAGATTTTCGCGGTGGAATGTTTTGTGATGAGCCTGGCTTGGGTAAGACCGTAACAGCTCTTTCTCTTATAATGAAGAAGCAAGGCGCATTAGCAGATCCACCAGATGGGGCAAAGGTGGTTTGGTGTCAACATAATGGTAATCAGAAATGTGGCTATTATGATATCATCGGTAATTACATCATTGACAGTAGTAATTTGGGGAAGAGGGATATGTTCCATGATGCTTGTAGAAATAGTGAGAACCATGATGACTCCTCCAAAAGAACAAGATTGATGGTTCCTGTTGAGCAAATCACTGGACTTAATTCATGTtccagagaagaaaagaaaacaccTGTAGGTGCATGCTCTGATCAGTTGATGCATGCAAGTCGATGCTCTTGGAGCTTGAGTAGCGTAAAGAAAGGTCTACATTTTACTTATGAAGAGGAAGCTGGGTTTTCCAAGGATAGAAAATTTAGTGAAAACTCTTCTAAACTAAAGAATGCATCAGATGTTGAATCACAGTCCTCTCAAAATAGGCCAGCTGATTATACGCAAGAAAAGGGTTACAAGAAGCCTGGGAAGCCTACAGTAGATTTTTTTGAGTGCAATGACACCTGGATTCAGTGTGATGCTTGCCACAAGTGGCGTAAGCTTGCAGACGCCAATATGGCCAATACTAATGCAGCGTGGTTTTGTAGTATGAATACTGATCCTTTGTATCAGAGTTGTAGCGTCCCAGAACAGTCTTGGCATAATAGCTGTGAAATAACTTACTTACCAGGATTTCATTTGAAAGGTACTGCTGGGGGTGAGAAGcaaaatgtttcattttttactGGTGTACTGAAGGAGCATCATACATTGATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCTAGACTTTCACCTGACAGGCTTGctgaaattgaaataaatggcATACGAGGTCCTATTTTAAACACCTGTACTGTGTCTACTGGATATCTTAATCCATACCACAAAATATTTCAAGCATTTGGCCTTATTAAGAGACTCGAAAAAGGTGTAAGTAAGTGGTACTATCCACAAAATCTTAATAATTTGGCTTTTGATGTGAATGCCCTTGGCTTGGCTCTGCGTGAGCCACTAGATTCTGTTAGGCTATACTTGTCAAGAGCAACCCTTATAGTTGTGCCTGCTAATTTGGTTGATCATTGGATAGCGCAAATAGAAAAGCATGTCAAACCTAGTCAACTGCGAGTTTACGTATGGACTGATCATTGGAGGCCATCTGTACACAGTTTGGCATGGAATTATGATGTTGTCATTACTACATTCAGTCGTCTGAGTGCAGAGTGGAGCCCACGTAAGAGAAGTGTTCTGATGCAAGTCCATTGGCTTAGGATCATGTTAGACGAAGGGCACACTCTTGGCTCAAGCTTGAACCTAACAAATAAGTTGCAAATGGCTATTTCTTTGACGGCTTCAAATCGTTGGATACTAACAGGAACACCAACACCTAACACTCCTAAAAGCCAACTGTCACATCTGCAACCATTGCTACGGTTCCTTCATGAAGAAGCTTATGGACAGAATCACAAGTCATGGGAAGCTGGTATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTGTTGCATCTACTTCATAACTGCATGATTAGTGCAAGGAAGATAGATTTGCATAGTATTCCACCATGTATCAAAAAAGCTGTTTTTCTAGATTTTGCTGAGGAGCATGCCAGAAGTTACAATGAATTGGTACTAACAGTTCGTCGTAATGTATTAATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTAGGAGTGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAAGTGGTCTGGATCCTGAATCAGGAGAGTATGCCTCCATTAGATATAATCTCGTCTTTGGTGGCCACTGTGTCAGGTGCAAGGAATGGTGCCGTCTTCCTTTCATTACACCATGCCGCCATCTATTGTGCCTTGATTGCGTTGCTTTAGACAGTACGAGGTGTACTTACCCTGGCTGCAGTAAATTATATGAGATGCAGAGTCCAGATACATTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTGGTTTCCTTCATGATTCCAGTTcaGGATTCTGATAAATCTAGAAAGTTCCCAACTAAAGGAAAGATGAGGAGTCAGGAAGTAAAATTGCTAAAGTTGATCCTTGTTGCTCAAATGACTAATTTGCTTAAGCATGAACATCCTGCCCGCAGTTTGCTACACCTGCCAATTAGTTGGTTCAATATGCATATGGGTGACAGTATGCTAATTCTTTTCCACTTCAGtattcatattcattttcaAATCAAATTGCCttcttttgggaatcATGGTTATGGGAAATGGATTGGACCCATTAAATTGTTGTCCCCAAGGTCCAAGATTTGCAATTTTGAGACTGATGCATCCAGACACATAATTAAGATGTTCCAAATAGCTCAAATCAAGCTTGACAATGTGTTTGaatttaatatttatagTCTTAGGCCATTTTGGGTCCGGAGACGGtATGAGTATGTAGATTCGACTATTTatgatatgtccaccttacgccacATTTATGTTGCGTACCTGACTATCTCGTTTCAAATAATAAATAAATACCTATGTGTGGATGAATCCAGAGTGGCCTTTGATATGGCTAAAAATGAACAATATATAAAGATCTATAAATATACCTCATGTATTGCACATGTCGAAGGCTAtgtgtttggtacATGGAATTATGAAATTTGGGTAAGGGCTTAA 4059 0.4092 MDDSFSDHKLCGFLFAVLSVTPSPPDPSASLGFKHRCDIFGDSSGSVGFRSQNGVVLVPVDSLTKQIEGADARASDSEQCKVAGRDSGLVSDCNGKVTPRGLRKKGTARRKNGVVAGGGSLKKRRMTKIGMVNGSVSVIHQLQALVSRKCLKIDARVISVELGGCEEARAVLLVDVYLPVALWSGWQFPRNGSTAGALFRHLRCDWGERRLMLSCSDYCRKTEGASESIWNLSDCHVLGCKLHYHVNDSSKNNLFELHEIFKKVPGVGKQQKSDSSRIIPLDNSSSSGIWEISDDILIKILAPLDPMDLARVSATCRHLRSSAASVMPCTKLKLFPHQQAAVEWMLHRERNAECLAHPLYVSFSTEDGFIFHVNTVSGEIVIGAAPTIKDFRGGMFCDEPGLGKTVTALSLIMKKQGALADPPDGAKVVWCQHNGNQKCGYYDIIGNYIIDSSNLGKRDMFHDACRNSENHDDSSKRTRLMVPVEQITGLNSCSREEKKTPVGACSDQLMHASRCSWSLSSVKKGLHFTYEEEAGFSKDRKFSENSSKLKNASDVESQSSQNRPADYTQEKGYKKPGKPTVDFFECNDTWIQCDACHKWRKLADANMANTNAAWFCSMNTDPLYQSCSVPEQSWHNSCEITYLPGFHLKGTAGGEKQNVSFFTGVLKEHHTLINSETKKALTWLARLSPDRLAEIEINGIRGPILNTCTVSTGYLNPYHKIFQAFGLIKRLEKGVSKWYYPQNLNNLAFDVNALGLALREPLDSVRLYLSRATLIVVPANLVDHWIAQIEKHVKPSQLRVYVWTDHWRPSVHSLAWNYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIMLDEGHTLGSSLNLTNKLQMAISLTASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGQNHKSWEAGILKPFEAEMEEGRSRLLHLLHNCMISARKIDLHSIPPCIKKAVFLDFAEEHARSYNELVLTVRRNVLMADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLDPESGEYASIRYNLVFGGHCVRCKEWCRLPFITPCRHLLCLDCVALDSTRCTYPGCSKLYEMQSPDTLARPENPNPKWPVVSFMIPVQDSDKSRKFPTKGKMRSQEVKLLKLILVAQMTNLLKHEHPARSLLHLPISWFNMHMGDSMLILFHFSIHIHFQIKLPSFGNHGYGKWIGPIKLLSPRSKICNFETDASRHIIKMFQIAQIKLDNVFEFNIYSLRPFWVRRRYEYVDSTIYDMSTLRHIYVAYLTISFQIINKYLCVDESRVAFDMAKNEQYIKIYKYTSCIAHVEGYVFGTWNYEIWVRA 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2260 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 941 IPR027417 -
Sto7g2260 1352 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 737 902 IPR014001 -
Sto7g2260 1352 MobiDBLite consensus disorder prediction 548 567 - -
Sto7g2260 1352 Gene3D - 756 946 IPR038718 -
Sto7g2260 1352 MobiDBLite consensus disorder prediction 547 574 - -
Sto7g2260 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 414 IPR027417 -
Sto7g2260 1352 ProSitePatterns Zinc finger RING-type signature. 1080 1089 IPR017907 -
Sto7g2260 1352 Pfam CW-type Zinc Finger 589 632 IPR011124 GO:0008270
Sto7g2260 1352 Gene3D - 584 635 - -
Sto7g2260 1352 Pfam SNF2-related domain 337 1000 IPR000330 GO:0005524|GO:0140658
Sto7g2260 1352 SMART fbox_2 292 332 IPR001810 GO:0005515
Sto7g2260 1352 SMART ultradead3 330 913 IPR014001 -
Sto7g2260 1352 CDD DEXDc_SHPRH-like 759 943 - -
Sto7g2260 1352 ProSiteProfiles Zinc finger CW-type profile. 584 635 IPR011124 GO:0008270
Sto7g2260 1352 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 122 1165 - -
Sto7g2260 1352 SUPERFAMILY F-box domain 284 323 IPR036047 GO:0005515
Sto7g2260 1352 PANTHER OS01G0952200 PROTEIN 122 1165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2260 Sto-Chr7 28131376 28147484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2260 333 413 RAD5 or RAD16-like Gene Family AT5G22750 30.682 7.46e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto7g2260 SNF2_N 3e-95 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2260 - - gmx:100803102 1646.33