Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2249 ATGTTTTATTTTTCCCCTTCATATTTGCAATTAATAGGCCCTCTAAAAAGACTAGAGAAGCTGATGCACCAAGGTGGGAATAGGTTTTGTGCTGATTGCGAGTCTCCAGACCCAAAATGGGTATCTTCAAGTATTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCGTTGAAGCTAGATCAATGGACAGATGACCAAGTTGATGCACTGGCAAAGTTGGGAGGAAATACATTACTAAATAAGAAGTATGAAGCTTGCATTCCAAGTAATATAACAAAACCAAAGCCAACTTCCACCATTGAGGAGCGTGCAGACTTTATCAGGAGAAAATATGAGCTATTACAGTTTTCGGAGTCTGATGAACGTTTAGCCTGCCCTTTTCCACCAGCACCAAGCAGTTCCTCATGTAGCGCTTCTCCTCCCGACAAGAAAAACTATAATAAGCAAATAACcaaacatcatcatcatcgaaTTGGGCATCCATTTCGTAATAGctggggaagaaaagaagacgGTCCAAAGAGTTCAAAGAAGGGCCACTCGTTGGCAGGTATGGTTGAATTTGTCGGGTTGGTGAAGGTTAATGTGCTTAAAGGCACTAATCTGGCGGTCCGGGACATGATGACTAGTGACCCTTATGTCATCCTTTCATTGGGTCACCAATCGGTAAAGACGCGCGTCATAAAGAACAGTTTGAATCCAGTCTGGAATGAGAACCTAATGCTTTCAATTCCAGAGAACATTCCCCCTCTTAAAGTGCTTGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGTGAGGCCGAAATAGACATCCAACCCCTACTCGCAGCGGCGAAGGCCCTCGAGAAATCCACAGGCAGTGAGGGGACACAGCTCGGAAAATGGGTGGCAAGCAAGGACACAACCCTTGTTAAAGATGGCGCCATCTCCATCACAGATGGGAAGATCAGACAGGACATATCGGTACGGCTACAGAACGTCGAGAGAGGTGAGCTGGAAGTTCAGCTTGAGTGTGTCCCTCTCACTCAGTag 1080 0.4278 MFYFSPSYLQLIGPLKRLEKLMHQGGNRFCADCESPDPKWVSSSIGVFICIKCSGIHRSLGVHISKVLSLKLDQWTDDQVDALAKLGGNTLLNKKYEACIPSNITKPKPTSTIEERADFIRRKYELLQFSESDERLACPFPPAPSSSSCSASPPDKKNYNKQITKHHHHRIGHPFRNSWGRKEDGPKSSKKGHSLAGMVEFVGLVKVNVLKGTNLAVRDMMTSDPYVILSLGHQSVKTRVIKNSLNPVWNENLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLLAAAKALEKSTGSEGTQLGKWVASKDTTLVKDGAISITDGKIRQDISVRLQNVERGELEVQLECVPLTQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2249 359 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Sto7g2249 359 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Sto7g2249 359 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Sto7g2249 359 Gene3D C2 domain 201 359 IPR035892 -
Sto7g2249 359 Gene3D Arf GTPase activating protein 14 137 IPR038508 -
Sto7g2249 359 Pfam C2 domain 204 292 IPR000008 -
Sto7g2249 359 CDD C2_ArfGAP 202 346 - -
Sto7g2249 359 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 137 IPR001164 GO:0005096
Sto7g2249 359 SMART C2_3c 204 299 IPR000008 -
Sto7g2249 359 MobiDBLite consensus disorder prediction 176 190 - -
Sto7g2249 359 MobiDBLite consensus disorder prediction 140 159 - -
Sto7g2249 359 MobiDBLite consensus disorder prediction 165 192 - -
Sto7g2249 359 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 293 IPR035892 -
Sto7g2249 359 CDD ArfGap 18 124 - -
Sto7g2249 359 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096
Sto7g2249 359 ProSiteProfiles C2 domain profile. 186 301 IPR000008 -
Sto7g2249 359 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 11 359 - -
Sto7g2249 359 SUPERFAMILY ArfGap/RecO-like zinc finger 16 129 IPR037278 -
Sto7g2249 359 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 11 359 IPR044518 GO:0005096|GO:0005543
Sto7g2249 359 MobiDBLite consensus disorder prediction 143 158 - -
Sto7g2249 359 SMART arf_gap_3 15 137 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2249 Sto-Chr7 28055020 28058536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2249 16 359 C2H2 Transcription Factor Family AT4G21160 47.384 2.20e-114 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2249 K12486 - gmx:100799376 516.924