Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2199 ATGATCAACTCCCTCACCTCTGACATTCTCAACTACCTCGTCTTCCGGTACCTTATGGAATCAGGTTTCACACATACTGCTTTTACTATTGGATTTGAGGCTGCTATTAACAAGCACTTGCCAGAACAGGAAAACTTGGTTCCAGCAGGTACTCTTATAAAATTAGTTATGAAGGGACTACAATACATGGAGATGGAAGCGAACTTGGGTGAGAGTGACACCAATGTGGATGAAGAATTCTCGTTCTTAAAACCTATGGATCTTATTACAAAGGATATGAATGAACTTTGGCAAATAgtaaaagaagaaaggaagaaacgAGAGGAGGATGAAAATAAAGATTCTGAGAAGGAGCATGACGATAAACAACAGCAGGAAAATCAGACTGACAAAGAAATGGTTAGCAATAAAGATAAAAAGGTTGCTATTGAGCAAAAGGAGGTTGGAACATTTAAAGTGCCAAAACCAAGACCACCAAAACCAAAGGACATTGCTGCAACATCAGCATCTCaaccatatgaaattcccaattCCAATGTGACAATTTTGGAAGGACATAAATCCGAGGTATGTACTTGTGCATGGAGTCCTACAGGATCTCTGCTTGCATCAGGGTCTACGGATTCAACAGCTTGTATATGGACAATATTGGAAGGAACTAAATGTGGTTCTGGACCTGCGAATATGTTGGTATTAAATCATGCCAAAGGTagaaaaaaggaagagaatggTGTCGCTAAGCTTGATTGGAATGCGGAGGGGACACTACTTGCGACCGGTTCATGGGATGGGAATGCTAGAATTTGGACCAGGAATGGTGAATTGAGGACTATGTTATGGAAGCATGAGGGACCTATACTCTGTCTGAAGTGGAATAAGGAGGGAGATTATCTTGTTTCCGGAAGTTCTGATAATACTGCAATTGTATGGGATGTGAAGCCAGAGAGCATAAAACAACAATTTACATTTCATTCAgGTCCTGTACTTGACGTTGATTGGCGCAATAATGTGTCATTTGCAACATGCTCCATGGACGAAATGATTTACGTTTGCAAGATCGGCGAAAACCATCTTCCTAAAGCTTTTGTTGGACACAAGGGTCAAGTTAATTGTGTCAGATGGGATCCTACAAGTTCGTTTCTGGCTTCTTGTTCTGATGATAAAACTGCAAAGGAAATATTTACCATCAGATGGAGCCCTTCAGGTCCCGGGACAAATAACCCTAATCACAAGTTGACTTTGGCCAGTGCATCATTTGACAATACTGTGAAGCTATGGGATATAGAGAGTGGGAAATCAATCTACACCTTGGATGGACACAGTTCATCTGTCTATTCTATTGCCTTCAGTCCCGATGGTAAGTATTTAGCCAGTGGATCTCATGACAAATCCGTGCACATATGGTCATTGAAGAATGGCGAGATAGTTAAAACATACAAAGGCAGTGGAAGCATTTATGAGGTCGGTTGGGATGAGTCGGGTGAAAAGAAGGCCATTGAAGGCGAAGCTGCATCTTGCTCTGAGAAAATGATCACCAAATTCAACACCGACCTTCTCAATTTCCTCATCTTCCGGTACCTTTGCGAATCAGGTTTCAGGAAAACTGGTTTAGCTCTTGTGATTGAGGCTGGTGCTAGTCTTAAGGAGCGCCAGCCAGAAGAGGGGCACTTGGTTCCACAAAAGGCTCTTATTACTTTAGTTATGAGAGGGCTATTTTTCACGGCGATGGTAGCAACCTTGGGTGATAATGACTTCACTGTGGATGAAAGATTAAACTTACAACCTATGGATCTTATCACAAAGAATCCGAAAGAACTTTTGCAAATACTAAAAGAAAAGGTAGATGAAAATCAGATTGACAGAGAAATCGTTACCGACAAAGAAGGAAAGGTTACTATCGAGCAAAAGGAGGTTGCAACAATTAATAAAGAGCCACAATTAAGGGACACTGCTACAAAATCAGCATCTCAACAATATGAAATTCCCCATTCCGATGTGACAATTTTGGAAGGACATACGTCCGAGGCTGTTTACAATTCATTTAGGTGTGTACTTGTGCATGGAGTCCTACAGGGTATCTGCTTGCATCGGGGTAGGTCTACGGATTCAACAGCTCGTATTTGGACAATAATGGAAGGAATTAAAAATTGTGGTTCTGGATCTGCGAATATGTTGGTACTGAATCATGCCAAAGGTAGCAAAAAGGAAGGGCATGATTGTGTCACTAAGCTTGACTGGAATGTGGAGGGGACACTACTTGCGACCGGTACATGTGCTGGGGATGCAAGAATTTGGTCCAGGAATGGTGAATTGAGGACTACGTTAGGGAAGCATGCGGGACCCATACGCAGTCTGAAGTGGAATAAGAATGGAGATTATCTTGTTACTGGAAGTTCTGATCGGTCTGCAATTGTATGGGATGTGAAGTCAGAGAACATGAAACAACAATTTAAATTTCATTCAgGTCCAATACTTGACGTGGATTGGCTCAATAATGAGTCATTTGCAACATGCTCCAAAGACACATTTATTTACGTTTGCAAGATCGGAAAAAACCAACCTTTAAGAGCTTTTGCTGGACACCAGGGAGAAGTTAATTGTGTCAGATGGGATCCTACAAGTTCGTTTCTGGCCTCTTGTTCTAATGATAAAACTGCAAAGATATGGAGTATGATATGCCATAGATACATTCGCGATTTAAGGGAGCATTCCATGGGAGTATTCAGTATCAGATGGAGCCCCTGTGGTCCCGGGACAAACAACCCCAATCACAAGTTGACTTTGGCCAGTGCATCATTTGACAAAACTGTGAAGCTATGGGACATAGAGCATGGGAAATCAATCTGCACGTTGCATGGGCACAGGGACCCTGTATATTCTATTGCATTCAGTCCCAATGGTGAGTACTTAGCCAGTGGATCTCCTGACAATTCCGTGCACATATGGTCACTAAAGGATGGCAAGATAGTCAAAACATACAGTGGCAATGCACCCATTCATGAGGTCGGCTGGGATAACTCTGGTGTAAAGAATGATGAAGGAAGGTATGATATGAGCACAGAAAAAAGGCAATGTTATAATAGCAATGAAGAACCCCCATCCTCTTGTATCTATCTCCCTGTGCTTCTAAGcaagggACATTCGATGATTTCTAGGCTAGAAAGGGAATTGGGGAGACCCTCCTTTGGCAAGCATCGTAGTTTAGTACAACGGTACAAAGTCAGGCATTTCAGAGTGGACAAGTGGCAAAGACCTTTGTATTCCAGTGTCTTGAGACTTGAACAATCTGATAAGTTAAGAGAAGTCAGAGTTGGTGGTAGTAATCCTGCTTCAGGAAAACACAACATATTTCCACCATCAATCTCTAATCTTTGTAGAGAAGGTAAATTCCATTCCATTCGAGATGCCACAAGTTTTGGGCACTCAATTATTTTAAGAGTCTTCAAATTTGATGGCAAACCCCCAACTGGAAATGATTCCACTAGTGGACTACTAAATATTGACAGCTCCTTAAGTGAGGGAAAGACAGTGTTCAGATGCTCAGGTAGTGATTTCAAACAATCCAAGCGGCCGACGAACAGGAATTCAAGTTTTGAGGCCGAAAATCCTCCATTGGGAAATGATACAAACTTAGGACAATTCCAGATTCTCAAAGTTGGAACAAATCCAGTGGAAAGGTCGTCAGAGAGTTGCAACTACTCTCAATACATATTTGAACAAGGAAATTATGGCAGTGGTGCAATGTTAATTCCAGATAGAGATAAGACTCGTAAGCATGTCAACTTGGACAACAAATCACTTATCATCTTTCTAGACATAAAAAGAACTGAACAAGTTTCGTACCTTGCTAGTAGCAGTGGTTTGGACTTCAGATTCCACCCTGTGCTTGGACACTTGATAGTCAATCTCATCCAATACATCCTCAGCCCCATAAACAGCATCTTTGACTTCATCAAGCCAGGCTTTGACATTTGGATTGTCTCCTCTTGTGGAAGAAATCGAGTATATCAGCAGAACCCAACTTGTCAAAGGCTGCCTGAAGAAATGCAGAGAGAAGAGCACCACCAACTAGCTCTGCAGCCATGGCAGAAGAAGGAATCCAAGAGAGGAAATGAATAG 4119 0.412 MINSLTSDILNYLVFRYLMESGFTHTAFTIGFEAAINKHLPEQENLVPAGTLIKLVMKGLQYMEMEANLGESDTNVDEEFSFLKPMDLITKDMNELWQIVKEERKKREEDENKDSEKEHDDKQQQENQTDKEMVSNKDKKVAIEQKEVGTFKVPKPRPPKPKDIAATSASQPYEIPNSNVTILEGHKSEVCTCAWSPTGSLLASGSTDSTACIWTILEGTKCGSGPANMLVLNHAKGRKKEENGVAKLDWNAEGTLLATGSWDGNARIWTRNGELRTMLWKHEGPILCLKWNKEGDYLVSGSSDNTAIVWDVKPESIKQQFTFHSGPVLDVDWRNNVSFATCSMDEMIYVCKIGENHLPKAFVGHKGQVNCVRWDPTSSFLASCSDDKTAKEIFTIRWSPSGPGTNNPNHKLTLASASFDNTVKLWDIESGKSIYTLDGHSSSVYSIAFSPDGKYLASGSHDKSVHIWSLKNGEIVKTYKGSGSIYEVGWDESGEKKAIEGEAASCSEKMITKFNTDLLNFLIFRYLCESGFRKTGLALVIEAGASLKERQPEEGHLVPQKALITLVMRGLFFTAMVATLGDNDFTVDERLNLQPMDLITKNPKELLQILKEKVDENQIDREIVTDKEGKVTIEQKEVATINKEPQLRDTATKSASQQYEIPHSDVTILEGHTSEAVYNSFRCVLVHGVLQGICLHRGRSTDSTARIWTIMEGIKNCGSGSANMLVLNHAKGSKKEGHDCVTKLDWNVEGTLLATGTCAGDARIWSRNGELRTTLGKHAGPIRSLKWNKNGDYLVTGSSDRSAIVWDVKSENMKQQFKFHSGPILDVDWLNNESFATCSKDTFIYVCKIGKNQPLRAFAGHQGEVNCVRWDPTSSFLASCSNDKTAKIWSMICHRYIRDLREHSMGVFSIRWSPCGPGTNNPNHKLTLASASFDKTVKLWDIEHGKSICTLHGHRDPVYSIAFSPNGEYLASGSPDNSVHIWSLKDGKIVKTYSGNAPIHEVGWDNSGVKNDEGRYDMSTEKRQCYNSNEEPPSSCIYLPVLLSKGHSMISRLERELGRPSFGKHRSLVQRYKVRHFRVDKWQRPLYSSVLRLEQSDKLREVRVGGSNPASGKHNIFPPSISNLCREGKFHSIRDATSFGHSIILRVFKFDGKPPTGNDSTSGLLNIDSSLSEGKTVFRCSGSDFKQSKRPTNRNSSFEAENPPLGNDTNLGQFQILKVGTNPVERSSESCNYSQYIFEQGNYGSGAMLIPDRDKTRKHVNLDNKSLIIFLDIKRTEQVSYLASSSGLDFRFHPVLGHLIVNLIQYILSPINSIFDFIKPGFDIWIVSSCGRNRVYQQNPTCQRLPEEMQREEHHQLALQPWQKKESKRGNE 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 775 810 - -
Sto7g2199 1372 MobiDBLite consensus disorder prediction 1182 1211 - -
Sto7g2199 1372 ProSitePatterns Trp-Asp (WD) repeats signature. 928 942 IPR019775 -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 951 992 IPR001680 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 269 IPR001680 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 816 IPR001680 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 437 474 - -
Sto7g2199 1372 CDD WD40 736 1008 - -
Sto7g2199 1372 Coils Coil 98 132 - -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 216 - -
Sto7g2199 1372 Gene3D - 512 603 - -
Sto7g2199 1372 Gene3D - 3 94 - -
Sto7g2199 1372 PANTHER WD40 REPEAT PROTEIN 115 499 IPR045183 GO:0003714|GO:0016575
Sto7g2199 1372 PANTHER WD40 REPEAT PROTEIN 612 1010 IPR045183 GO:0003714|GO:0016575
Sto7g2199 1372 PANTHER WD40 REPEAT PROTEIN 6 112 IPR045183 GO:0003714|GO:0016575
Sto7g2199 1372 PANTHER WD40 REPEAT PROTEIN 518 614 IPR045183 GO:0003714|GO:0016575
Sto7g2199 1372 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 38 IPR006594 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 437 478 IPR001680 GO:0005515
Sto7g2199 1372 SUPERFAMILY WD40 repeat-like 176 494 IPR036322 GO:0005515
Sto7g2199 1372 MobiDBLite consensus disorder prediction 1348 1372 - -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 900 950 IPR001680 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 313 - -
Sto7g2199 1372 CDD WD40 179 469 - -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 269 - -
Sto7g2199 1372 PANTHER F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN 612 1010 - -
Sto7g2199 1372 PANTHER F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN 518 614 - -
Sto7g2199 1372 PANTHER F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN 115 499 - -
Sto7g2199 1372 PANTHER F-BOX-LIKE/WD REPEAT TBL1XR1-LIKE PROTEIN 6 112 - -
Sto7g2199 1372 ProSitePatterns Trp-Asp (WD) repeats signature. 794 808 IPR019775 -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 858 891 IPR001680 GO:0005515
Sto7g2199 1372 SUPERFAMILY WD40 repeat-like 737 1005 IPR036322 GO:0005515
Sto7g2199 1372 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Sto7g2199 1372 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Sto7g2199 1372 PRINTS G protein beta WD-40 repeat signature 928 942 IPR020472 -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 320 IPR001680 GO:0005515
Sto7g2199 1372 Gene3D - 171 509 IPR015943 GO:0005515
Sto7g2199 1372 Gene3D - 656 1017 IPR015943 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 216 IPR001680 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 436 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 176 215 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 314 352 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 728 766 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 768 807 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 430 469 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 389 427 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 851 890 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 228 270 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 944 983 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 355 388 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 893 941 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 272 311 IPR001680 GO:0005515
Sto7g2199 1372 SMART WD40_4 810 848 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 853 890 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 362 391 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 897 941 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 431 469 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 946 983 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 178 214 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 736 766 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 771 807 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 282 311 IPR001680 GO:0005515
Sto7g2199 1372 Pfam WD domain, G-beta repeat 244 269 IPR001680 GO:0005515
Sto7g2199 1372 MobiDBLite consensus disorder prediction 104 168 - -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 858 891 - -
Sto7g2199 1372 Pfam LisH 10 29 IPR006594 GO:0005515
Sto7g2199 1372 SMART Lish 515 547 IPR006594 GO:0005515
Sto7g2199 1372 SMART Lish 6 38 IPR006594 GO:0005515
Sto7g2199 1372 MobiDBLite consensus disorder prediction 104 159 - -
Sto7g2199 1372 ProSiteProfiles LIS1 homology (LisH) motif profile. 515 547 IPR006594 GO:0005515
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 951 988 - -
Sto7g2199 1372 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 391 IPR001680 GO:0005515
Sto7g2199 1372 ProSitePatterns Trp-Asp (WD) repeats signature. 298 312 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2199 Sto-Chr7 27611842 27631579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2199 239 479 Eukaryotic Initiation Factors Gene Family AT2G46290 27.490 1.79e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2199 K04508 - pvy:116109397 617.461