Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2152 ATGGGTCGAGGCAAGATTGAGATCAAAAGGATCGAAAATGCTAATAGCAGGCAGGTCACATTCTCCAAGAGGCGAAATGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTCTGTGATGCTGAGGTTGCTGTCATCATCTTCTCTAACACAGGGAAGCTCTTCGAGTTTTCCAGTTCTGGTATGGTGCAAACACTTTCAAGATACAACAAATGCTTTGATTCTTCAGAGACTGCTGTAGTGGAACTGGAATGTAAAGCAGAGAGCGAAGATTCAAAGACGGTGGAGATTCTCCAAGGAGAAATTGCAAAGCtagaaaaaaaacaattACGATTGTTGGGTAAGGACCTGTCTGGATTGGATTTAAAGGAGTTGCAACATCTCGAGCAGCAACTCAGCGAAGGCTTATTTTCTGTCAAGGAGAAGAAGGAGGAACTGCTAATGGAGCAACTGGAGCAGTCAAGAGTACAGGTCGAGGAGCTTCGTTGTCTCTTTCCAACGACCGAGCATGTGGTCCCGTCTTTTCTTCCGTACCACCATGTCCAAAGAAGTAATGGCCTTGTAAATAATGGTTTCTTGTGTCCCAACTTTGCCAGTAACTCTGAAAATGAGAAAGGAGATTCAGACACCACATTGCATTTAggTTCCTTGGAAGGAGGTCCGATGAAGTACTTCAGCATGAGGTTGCCCATTGATGTTCATCACAAGAGGAAGGCACCTGAGAGAGAAACCTTCTCCAATGACTCAGAGTCTCAAATGGCTCTTCTCTGA 771 0.4423 MGRGKIEIKRIENANSRQVTFSKRRNGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMVQTLSRYNKCFDSSETAVVELECKAESEDSKTVEILQGEIAKLEKKQLRLLGKDLSGLDLKELQHLEQQLSEGLFSVKEKKEELLMEQLEQSRVQVEELRCLFPTTEHVVPSFLPYHHVQRSNGLVNNGFLCPNFASNSENEKGDSDTTLHLGSLEGGPMKYFSMRLPIDVHHKRKAPERETFSNDSESQMALL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2152 256 PANTHER MADS BOX PROTEIN 1 218 - -
Sto7g2152 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 Pfam K-box region 91 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto7g2152 256 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Sto7g2152 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Sto7g2152 256 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Sto7g2152 256 ProSiteProfiles K-box domain profile. 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto7g2152 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto7g2152 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 218 - -
Sto7g2152 256 MobiDBLite consensus disorder prediction 237 256 - -
Sto7g2152 256 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2152 Sto-Chr7 27104388 27108240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2152 1 249 MADS-box Gene Family AT5G13790 48.864 6.78e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto7g2152 K-box 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2152 - - zju:107417456 307.76