Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2111 ATGACAAGAGCTTTCACTCATAAAGCCTCACAATCTCCAACCTCTCAAAAATCACTCAGTGTTGATGACTATGGAGCCATATCCAATGATGGAAAAGAAGACactcagGCCTTCCAAAAAGCTTGGAAAGAGGCATGTTCTAGTGGAGCTGTTCTTGTTGTACCTGAGAAAAAGGTGTATCATCTTAAGCAAATAACATTTTCTGGTCCATGCCAGCCAAACACTGCCTTTATGGTGTATGGAACAATCACTGCATGGCCTGAAATTTCTTCATATGAAGATGATAGAAGACACTGGATTCAGTTTGATGGCATCTCAAATTTCAGAGTTGATGGTGGTGGAAGAGGCACCATCAATGGCAATGGGAAAAAATGGTGGCAAAATTCttgcaaaattaataaaaaccttGCTGTGACTTTCAATGAATGCAATAACTTGAGAGTGGAAAATCTGAGGTTCAAGAATGCACAGCAAATGCATATGAATTTCCAGAAATGTTTCAATGTGAGAGCTTCAAATTTGGTAGTGAGAGCACCAGAAAATAGCCCTAATACTGATGGGATTCATGTCACAGAGACTCAGAATATTCTCATAAGCAATAGTGATGATTGCATTTCAATAGTAAGCGGATCGAAAAATGTTAGAGCGACAGATATAACATGCGGCCCAGGACATGGAATCAGtATTGGAAGCCTAGGAGCTGATAATTCAGAAGCTGAAGTGTCCAATGTGTTAGTGAACAGAGCCACTTTGATAGGAACAACTAATGGTGTGAGAATAAAGACTTGGCAGGGAGGTTCAGGGTATGCAACAAACATCAAGTTTCTAAACATAGCAATGAGAAATGTAACAAACCCCATCATCATAGATCAAAACTATTGTGATCAAGAAGAGCCATGCAAAGAACagGAATCAGCAGTGCAATTGAGCAACGTAGTGTACCAAAACATAAAAGGCACAAGTGCTTCAGAAGTGGCTATCAAATTTGATTGCAGTAAAAGTGTGCCTTGCAGAGACATATACGTTGAAGATGTGATATTGGAAGCTCAAGgaggaaataataataataaaaatggagGAACCTCAGCTTCTTGTGATAATGTTAAATATATCAACAAAGGCAAACTTTTCCCTCAGTGTTCTCATTGA 1149 0.3768 MTRAFTHKASQSPTSQKSLSVDDYGAISNDGKEDTQAFQKAWKEACSSGAVLVVPEKKVYHLKQITFSGPCQPNTAFMVYGTITAWPEISSYEDDRRHWIQFDGISNFRVDGGGRGTINGNGKKWWQNSCKINKNLAVTFNECNNLRVENLRFKNAQQMHMNFQKCFNVRASNLVVRAPENSPNTDGIHVTETQNILISNSDDCISIVSGSKNVRATDITCGPGHGISIGSLGADNSEAEVSNVLVNRATLIGTTNGVRIKTWQGGSGYATNIKFLNIAMRNVTNPIIIDQNYCDQEEPCKEQESAVQLSNVVYQNIKGTSASEVAIKFDCSKSVPCRDIYVEDVILEAQGGNNNNKNGGTSASCDNVKYINKGKLFPQCSH 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2111 382 ProSitePatterns Polygalacturonase active site. 218 231 IPR000743 GO:0004650|GO:0005975
Sto7g2111 382 PANTHER POLYGALACTURONASE 10 381 - -
Sto7g2111 382 Pfam Glycosyl hydrolases family 28 52 369 IPR000743 GO:0004650|GO:0005975
Sto7g2111 382 MobiDBLite consensus disorder prediction 1 25 - -
Sto7g2111 382 PANTHER - 10 381 - -
Sto7g2111 382 SUPERFAMILY Pectin lyase-like 11 381 IPR011050 -
Sto7g2111 382 MobiDBLite consensus disorder prediction 1 23 - -
Sto7g2111 382 Gene3D - 3 377 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2111 Sto-Chr7 26683006 26687038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2111 14 381 Glycoside Hydrolase AT3G07970 58.486 1.55e-150 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2111 K01184 - gmx:100796446 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2329 4 24677947 24678990 Sto7g2111 7 26683006 26687038 CCT
Sto7g2111 7 26683006 26687038 Sto7g2111 7 26683006 26687038 ECH