Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2088 ATGGTAGTACCGGTGAGGATTTGTAAGTTTTATGCTCGTGGTTCGTGTTTGAAAGGGGAGCAATGTGATTATTCTCATGACAGAAAGGACACTCCAGTTGATATTTGCACATTCTATCAGAAAGGACACTGCTCTTATGGTAGTCGATGTAGATATAAACATATCAAAGATTCTCAAGCACATTTAGCAGTGTCATCACCAAGTGGTCCTCATTCTCTGGCTTCAAACTCTGTTATGGCACATACCACTAGAGGTAAATCAAGTTGGGTTCCAAAAACTACAAAGTTGTCTCCTCCTTTTGACAAACGTGCAGGGAGTGCACATTGTAAGCATCAGGATTCTCCAAAGAATGGTGATGTTGGTGAATCCAGTACTGCCATACCACAGCGTATCTTTTGTTCATTTGCTGCTGCTAACTGTCCCTTGGGAGAAAAATGTTTACTAATTCATGGAGACCAGTGTTTATACTGCAAAAAGTACTGCTTGCATCCCACTgaacaaagagagagagaggatcaTTTGAATTCTtgtgagaaaaaggaaaaatatctTCAGGTATTGAAAGATAGTCAAGAAATAGAGTGTAATGTTTGCTTGGAGCGTGTTCTTTCAAAGCCTAAAGCAGCTGAGCGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGTAGTAGTGCCCCCACATCTGGGATAGACAACatctttaataataatgataataataatactgtGAGGACCTGTCCAGTGTGCCGCACGCTATCTTATTTTGTAATTCCTAGTCCTATATGGTATTCCTCAAAGGAAGAAAAGCAGGAAATTATTGACAACTACAAGGCAAAGTGCAAGTTGATTGATTGCAAGCATTTTAACCTTGGAAATGGGAACTGTCCATTTGGAAATCGCTGTTTCTACAAGCATAATGTGAAGCCTGGGTCGCTGACATGGAGACATGGAAGGCCACCGCCTCCACGCCGCCATAGAACAAATAACAATATGGATATGTATGACATGATAGATATGCTCAGCGAATTTGATTTAGAAAGTGGAGAATTTTATTCCATCATGCGGGATTCAGAGTTTTTTGAAGATATGGATCCATTTGAAGCTATGGCTGTGTCAGATGCGCTGGCTTCTGGTTCTGGGCAGCGTTTTTtcgatgatgaagatgaagatgaagatgaagatccCGAAGAAGATTTTTTCCGGTTGGTTGCTCTATCAGCTGCTCTGGGTGGTAATCCTTTTGACTTTAATCCTATGGGGGCAGCATTTTTTTCAATGGGGATGAATTCTGATTTGGAGGAAGAAGATAGTGACGAAGAGTAG 1353 0.3851 MVVPVRICKFYARGSCLKGEQCDYSHDRKDTPVDICTFYQKGHCSYGSRCRYKHIKDSQAHLAVSSPSGPHSLASNSVMAHTTRGKSSWVPKTTKLSPPFDKRAGSAHCKHQDSPKNGDVGESSTAIPQRIFCSFAAANCPLGEKCLLIHGDQCLYCKKYCLHPTEQREREDHLNSCEKKEKYLQVLKDSQEIECNVCLERVLSKPKAAERKFGMLPECDHAFCLSCIRNWRSSAPTSGIDNIFNNNDNNNTVRTCPVCRTLSYFVIPSPIWYSSKEEKQEIIDNYKAKCKLIDCKHFNLGNGNCPFGNRCFYKHNVKPGSLTWRHGRPPPPRRHRTNNNMDMYDMIDMLSEFDLESGEFYSIMRDSEFFEDMDPFEAMAVSDALASGSGQRFFDDEDEDEDEDPEEDFFRLVALSAALGGNPFDFNPMGAAFFSMGMNSDLEEEDSDEE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2088 450 Pfam Zinc finger, C3HC4 type (RING finger) 195 259 IPR018957 GO:0046872
Sto7g2088 450 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 6 450 - -
Sto7g2088 450 ProSiteProfiles Zinc finger C3H1-type profile. 3 29 IPR000571 GO:0046872
Sto7g2088 450 ProSiteProfiles Zinc finger C3H1-type profile. 289 318 IPR000571 GO:0046872
Sto7g2088 450 CDD RING-HC_MKRN 195 260 - -
Sto7g2088 450 ProSiteProfiles Zinc finger RING-type profile. 195 260 IPR001841 -
Sto7g2088 450 Pfam RNA-binding, Nab2-type zinc finger 133 150 - -
Sto7g2088 450 Pfam RNA-binding, Nab2-type zinc finger 7 26 - -
Sto7g2088 450 Pfam RNA-binding, Nab2-type zinc finger 294 315 - -
Sto7g2088 450 SUPERFAMILY CCCH zinc finger 5 27 IPR036855 GO:0046872
Sto7g2088 450 SMART ring_2 195 259 IPR001841 -
Sto7g2088 450 ProSiteProfiles Zinc finger C3H1-type profile. 30 57 IPR000571 GO:0046872
Sto7g2088 450 PANTHER MAKORIN-RELATED 6 450 IPR045072 -
Sto7g2088 450 SMART c3hfinal6 128 152 IPR000571 GO:0046872
Sto7g2088 450 SMART c3hfinal6 289 317 IPR000571 GO:0046872
Sto7g2088 450 SMART c3hfinal6 4 28 IPR000571 GO:0046872
Sto7g2088 450 SMART c3hfinal6 30 56 IPR000571 GO:0046872
Sto7g2088 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 291 IPR013083 -
Sto7g2088 450 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Sto7g2088 450 Gene3D - 4 68 - -
Sto7g2088 450 MobiDBLite consensus disorder prediction 99 123 - -
Sto7g2088 450 SUPERFAMILY RING/U-box 188 266 - -
Sto7g2088 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 54 IPR000571 GO:0046872
Sto7g2088 450 SUPERFAMILY CCCH zinc finger 31 54 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2088 Sto-Chr7 26473151 26476885 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto7g2088 zf-C3HC4 1.9e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2088 K15687 - gmx:100788886 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2088 7 26473151 26476885 Sto7g2088 7 26473151 26476885 ECH