Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2085 ATGCAAGGAGAGTGCAATATCATAGTTTTCAAGAAAGGAATGGCAGACCTCATCACCGTCAACTACAGAAACAATGTTAATTTTCAAGTCGTGGGGATAGATATTACCgatcttttaaatagttttactTCTTCTCGTGTCTTGGTTCTAAGATCTAATACTCTTCTTCATAGTTTCAATAGGATTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCAAAATAACATATGCACATTTTATCAGAAAGGAGTATGTGCCTATGGTAGTCACTGCAGATATGATCATGTCAAAGTTTCTCGTGAACAGTCCTACACTCCATCTTCTTCAGCAAGTGTTCACCAGCCCCTAAATTCAGATACTAGAATTATGTCAAATGGGGTTGCTACAGGATCTGAATTGTCTTCTTTTAGCAGTCCTTCCCTTAATCCTATTATTCCGGCCTGGAATCAAGAATCTGAGTATCATATTCCGGCATGGAGGGATCAAGAATCTCAGTATCATATTCTTCCATGGAATCAAGAATCTGGGTATCAAGATTTCATAGAGGAAAGTGATGTTGGTCAATCAAGAATTACTGCACCTTCTGAGCTTTCAATCTGTTCATTTGCTGCAGCTGGTAACTGTCCCAGAAAGGAAAAATGCCCTTTTATTCATGGAGATTTGTGTCCCACCTGTGGAAAACACTGCTTGCATCCTTTTCGAGCTGAGGAAAGAGAGGAACATATGAAGTCTTGTGAAAAAAAGCAAAAGCATCTTGAGGCATTGAAACAAAGTCAAGATATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGCCTACTATCTGAATGTGATCACCCCTTCTGCATATCCTGTATTAGGAATTGGCGTAGTAGTAACCCAACCCTTGGTATGGATGTCAATAGCACATTGAGGGCCTGTCCAATCTGTCGCAAACTTTCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCTACTACagaagaaaaacaagaaatCATTGACAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAACATTTTGACTTTGGGAATGGGAACTGCCCTTTTGGAACTAGCTGTTTCTACAAGCATGCATACCGAGATGGAAGACTTGAGCAGGTAGTTCTGCGACATCTTGGGGCTGCAGATGGCGACACTGTGATTGCTAAAGACATCAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATGA 1296 0.3974 MQGECNIIVFKKGMADLITVNYRNNVNFQVVGIDITDLLNSFTSSRVLVLRSNTLLHSFNRILCKFFAHGACLKGEHCEFSHDWKDPQNNICTFYQKGVCAYGSHCRYDHVKVSREQSYTPSSSASVHQPLNSDTRIMSNGVATGSELSSFSSPSLNPIIPAWNQESEYHIPAWRDQESQYHILPWNQESGYQDFIEESDVGQSRITAPSELSICSFAAAGNCPRKEKCPFIHGDLCPTCGKHCLHPFRAEEREEHMKSCEKKQKHLEALKQSQDIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIDSYKEKLKSIDCKHFDFGNGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGDTVIAKDIRLSDFLANMHLR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2085 431 ProSiteProfiles Zinc finger C3H1-type profile. 365 394 IPR000571 GO:0046872
Sto7g2085 431 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Sto7g2085 431 Gene3D - 56 127 - -
Sto7g2085 431 Pfam CCCH-type zinc finger 91 110 IPR041367 -
Sto7g2085 431 Pfam CCCH-type zinc finger 63 83 IPR041367 -
Sto7g2085 431 SUPERFAMILY RING/U-box 266 342 - -
Sto7g2085 431 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Sto7g2085 431 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Sto7g2085 431 SMART c3hfinal6 58 84 IPR000571 GO:0046872
Sto7g2085 431 SMART c3hfinal6 365 393 IPR000571 GO:0046872
Sto7g2085 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 341 IPR013083 -
Sto7g2085 431 Pfam RNA-binding, Nab2-type zinc finger 370 392 - -
Sto7g2085 431 Pfam RNA-binding, Nab2-type zinc finger 214 234 - -
Sto7g2085 431 ProSiteProfiles Zinc finger C3H1-type profile. 58 85 IPR000571 GO:0046872
Sto7g2085 431 SUPERFAMILY CCCH zinc finger 59 83 IPR036855 GO:0046872
Sto7g2085 431 SMART ring_2 278 335 IPR001841 -
Sto7g2085 431 CDD RING-HC_MKRN 278 336 - -
Sto7g2085 431 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Sto7g2085 431 SUPERFAMILY CCCH zinc finger 88 110 IPR036855 GO:0046872
Sto7g2085 431 ProSiteProfiles Zinc finger RING-type profile. 278 336 IPR001841 -
Sto7g2085 431 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 60 431 - -
Sto7g2085 431 ProSitePatterns Zinc finger RING-type signature. 302 311 IPR017907 -
Sto7g2085 431 Pfam Zinc finger, C3HC4 type (RING finger) 278 335 IPR018957 GO:0046872
Sto7g2085 431 PANTHER MAKORIN-RELATED 60 431 IPR045072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2085 Sto-Chr7 26457598 26462523 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto7g2085 zf-C3HC4 3.8e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2085 K15687 - gmx:100817071 619.387