Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2021 ATGGAGCTTGGCCTGAGCTTAGGAGATAATCACGCTTCTTCAAACCCTTCtgatcatcttcaaccttccgGCTGCCTCCTGGAATTAGGCTTCAACACCACCTTATCAATCGGCCCCATTTGTACCCACAAAACACCAAATCATCACACTCATCGTaataatgaaaaagaagaagaaaaagagcaaAAGCAGAAACAGAGTACTTCTGAAGAATACATCCAGCTTGATCTTCTTCCTCGCACTAACCCACCTTCTCTAATCCCCTTTCCATGGCTTCCCTTCGAAAATGGGAGTTCTTCCAGAGGCTTCGACGTGAACAGATTGCCGGaatcggcggcggcggcggcggcggtggaggaggaagacgagGCGGCGGCGCTGTCGTCTTCTCCGAACAGCGCGGCGTCGTCGTTTCGGACGGATCTCCGTATGTATAACAAAGGAGGAGGGTCGACGAACAAGAGGGAGAATTCTGATGATGGAGAGACAGAGACGTTCGATGATCATCACAAAGCTACTTCTTCGACAAGAGCGAGCGATGAAGATGACAACGTTGTGGGAAGTGGTCGTACGAGGAAGAAGCTACGGCTGTCAAAGGAACAATCTGCCTTCCTTGAAGAAAGCTTCAAAGAACATACTACTCTTAACCCAAAACAGAAGCTTGCTCTTGCAAATCAACTCAATCTCCGTCCTCGCCAAGTAGAAGTATGGTTTCAAAATAGAAGAGcaagGACAAAGTTGAAGCAGACAGAGGTGGACTGTGAGTACCTGAAGAGGTGTTGTGAGACATTAACAGAAGAGAACAGAAGGCTTCACAAGGAGCTTCAAGAACTGAGAGCTTTGAAGACCAATAATTCAAACCCATTCTACATGCAATTACCAGCCACAACCTTGACTATGTGTCCCTCATGTGAGAGAGTGGCCACCAATAGTAATTCTAATTCCTCTACTATCACGAATACTTCTACCCCCAAAGCCATTAATACCAATACAGAAGCTTCAGCCACACCCATTGGATTATTCCCTCTCATGGCTCAGCCTACAACTCCATCTTAA 1056 0.4233 MELGLSLGDNHASSNPSDHLQPSGCLLELGFNTTLSIGPICTHKTPNHHTHRNNEKEEEKEQKQKQSTSEEYIQLDLLPRTNPPSLIPFPWLPFENGSSSRGFDVNRLPESAAAAAAVEEEDEAAALSSSPNSAASSFRTDLRMYNKGGGSTNKRENSDDGETETFDDHHKATSSTRASDEDDNVVGSGRTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNNSNPFYMQLPATTLTMCPSCERVATNSNSNSSTITNTSTPKAINTNTEASATPIGLFPLMAQPTTPS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2021 351 SUPERFAMILY Homeodomain-like 174 249 IPR009057 -
Sto7g2021 351 Gene3D - 196 246 - -
Sto7g2021 351 Pfam Homeobox associated leucine zipper 248 282 IPR003106 GO:0006355|GO:0043565
Sto7g2021 351 CDD bZIP 241 280 - -
Sto7g2021 351 ProSiteProfiles 'Homeobox' domain profile. 188 248 IPR001356 GO:0003677
Sto7g2021 351 MobiDBLite consensus disorder prediction 48 67 - -
Sto7g2021 351 Coils Coil 261 284 - -
Sto7g2021 351 CDD homeodomain 192 249 IPR001356 GO:0003677
Sto7g2021 351 PANTHER - 1 332 - -
Sto7g2021 351 MobiDBLite consensus disorder prediction 126 152 - -
Sto7g2021 351 SMART halz 248 293 IPR003106 GO:0006355|GO:0043565
Sto7g2021 351 MobiDBLite consensus disorder prediction 153 193 - -
Sto7g2021 351 MobiDBLite consensus disorder prediction 42 70 - -
Sto7g2021 351 ProSitePatterns 'Homeobox' domain signature. 223 246 IPR017970 GO:0000981|GO:0006355
Sto7g2021 351 MobiDBLite consensus disorder prediction 122 193 - -
Sto7g2021 351 Pfam Homeodomain 192 246 IPR001356 GO:0003677
Sto7g2021 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 332 - -
Sto7g2021 351 SMART HOX_1 190 252 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2021 Sto-Chr7 25684351 25686224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2021 101 351 Homeobox Transcription Factor Family AT3G60390 50.187 2.33e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto7g2021 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2021 K09338 - gmx:100805312 326.25