Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2019 ATGGAGCTTGATTTGAACGAGGAACCTTTGGACCAAACTCCTACTTCAGTGATTGAATTTGATTCTATATTAAATGAGCTAGAATCTACGCATGGACATATAGAAGATCGTATTAGGCACCTTGAAGCAGTAACCTCCAGAGCTAGGCAGCGTCAGAGGTGGCGACGTGGTGGTCGTGATTCCGTTCGAATAAGTAATATCGTGCCagatatgatgatgatgacaccAAATGCTCAAGATGAATCAAGGATGCCCCTGGAAGATGTTGAAAGAACCACTGACAATAGGAAAAAAGGCAAAAGGAACAGTGCCCATTTAGTAGCTAAAGCGTTGGGAATGGATCCATATATCGACAACGAGGCCTCCGAGAGCCGCACTGGGAATTTTTTCGAATGTTACATCTGCCTGGACACGGCGAAGGATCCTATTTTGACTTGCTGTGGTCACTTGTTCTGTTGGCCGTGCTTCTATCAGGTGTCATGTGCTTATAAAAATGTAAGGGAATGCCCTGTTTGTAAAGGAGAGGTCTCTGAAACAGGGATTATTCCGATTTATGGCAATGAAGATGACTCTAGCAACTCtaagtcaaaattaaaagaagctGGTTTGACAGTCCCTCCTCGTCCGCAAGCGTgtaggattgagggttttagGCAGAAGCTCATAAGCCGAGGAACATCTTCTTCTACAGTCCAGGACATTAGGTGGTTTAATAACAACACTGGTGTGACCATAACAGACGGAACTCGTCATCTGGTCAATCAATCTCGCCATTCCCAGTCCCAAGAATTACCCCGCATGGAGACAGAAGATGGTCAACTAAATCGGTCACATCAACTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTCTCATCACTGTCATCAGCATTGAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGTGACCTTGAAGCATATATTCATCCTCAGCAACCTCAACCCGGGGGAAGAATCAGACAACAACTAGATCCTTCTAGTCATCTAAGCATTTTGCCTCCTCCCCTTACTGGTGCAAACGTACCTTGGAGTCATACGCCAGATGTTGCTGCGACGAATTCTGCagcatcaacttctatttctcCTCCGGGTATGAACGATAATGTTACTGCTGTTATAAATTCGGGAATCCAAACTACAGATAGCAGTGTACAGATTAGCTCAATGGAGCCTTCTTCATCTTCCAGTAGAACTGTTGTTTTAGGACTTCCAGATATTTACAACAGAGTTTCAAATGGGCGCCGAAGGAGAAGGGTAAGAAGATGA 1290 0.4194 MELDLNEEPLDQTPTSVIEFDSILNELESTHGHIEDRIRHLEAVTSRARQRQRWRRGGRDSVRISNIVPDMMMMTPNAQDESRMPLEDVERTTDNRKKGKRNSAHLVAKALGMDPYIDNEASESRTGNFFECYICLDTAKDPILTCCGHLFCWPCFYQVSCAYKNVRECPVCKGEVSETGIIPIYGNEDDSSNSKSKLKEAGLTVPPRPQACRIEGFRQKLISRGTSSSTVQDIRWFNNNTGVTITDGTRHLVNQSRHSQSQELPRMETEDGQLNRSHQLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIHPQQPQPGGRIRQQLDPSSHLSILPPPLTGANVPWSHTPDVAATNSAASTSISPPGMNDNVTAVINSGIQTTDSSVQISSMEPSSSSSRTVVLGLPDIYNRVSNGRRRRRVRR 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2019 429 CDD RING-HC_AtRMA_like 130 174 - -
Sto7g2019 429 Pfam Zinc finger, C3HC4 type (RING finger) 131 178 - -
Sto7g2019 429 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Sto7g2019 429 SUPERFAMILY RING/U-box 131 178 - -
Sto7g2019 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 241 IPR013083 -
Sto7g2019 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 324 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto7g2019 429 SMART ring_2 132 172 IPR001841 -
Sto7g2019 429 Coils Coil 24 44 - -
Sto7g2019 429 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2019 Sto-Chr7 25662877 25664250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2019 110 405 C3H Transcription Factor Family AT3G58030 32.558 5.72e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2019 K10666 - gmx:100793230 298.13