Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g2013 atgtCCTCCATCGCCGCCCCCGCCGCCGTCCCTGATTCCACCGCACCAGAGACGGCGGAAGCAGAAATGAAGACCTACTGGTGTCACGAATGCGATATGAGTGTCGctttgtcttctccttcttcttcttcttcgtcttcatcttcctcctcaGCTTCGTCTTCCACTCTCCTCTGCCCCCATTGCCACACACACTTCCTCGAACTCATGGACTCCCCTCTCTTCCCTCAATCCgactcccactcccactccctTTCCCTCTTCGACACCACCTACCTCCACTACCTCATCCAGCACCACCTCATTCCCTCCGGCTCCGACAACGACGACGAGGAATCCGACGATGTCTTCCCCGACCCCTTAACTTCCCGAAAATCTCGCTCCGATTCTATACCCACTATTCTCGTTACCTCCTCCTTGCTCTCTCAGCTCGACCCAGGCGGGGTTTTGTGTGCGGTTTGCAAGGACCCAATTGGGGTCGATGCGGAGGCGAAGCAGCTTCCGTGCAAGCATTTGTATCACTCCGATTGCATTACGCCGTGGCTGGAGCACCACAATTCGTGCCCGCTGTGTCGGTTTCAGCTCGTCGGCGagcaagaggaggaggaggaggaaggggTTTCTCAGGGGAGGAGGATCAGGAGGCAATTGAGAACGGCGATGGTGAGGTTGTCGGAATTGATGGAAGAGGATGATGATTTCTATGGATTGAGGACTACTCTGAGTCACATTGCGAGTAGACACGGCGTTCTTTCTTCTAGGGATGCTGAGAATCCTTCTGCTTCATTGGATTCCACTCACACTAGGGAGCCAGATGAAGATTCCATAGCTGTTGGTGGGAATGGGGATTTGGAGGAGAGAAGAGGATGCCATGGTAGGCTGAGTCTCTTCAAGGTTTTGCTATTGCCTTTTGCAATCTCAAGGAAATTAGAGGCAGTTCTAGTTTGTATTTTCATTGGCAGTGAAGAGAAATTTACTTGGGGCATTGCTTCGAATTCTAATGATGGTAGGGATTCAGAGACTAGTTTCTGGTACTCTTGTTTCCATTTGTTCAGTAAGGAACTCCTTTTAGGTATAGGGTGTTTAAACGTCAAAGAAATCTTGGAGATGTGTCACCATAGCTTAGGTGACATGTTGATGAAGGTGGGCATGTTCTTCTTGATTCAAGCTTTGGTTTATGTTATTCTTTCCAATTCATCAAATGTCTTCTCCAAGAGTTCGGTTAAGAGGTCGCATAGCTTCAAGCCGGCCCGGTCGGTCAGTATCCGCCGGATGCTCGCGCTTCTCTCCGATATGCCGCCGGAAGGCGAGCCCTCTCCGAATTCTTCCAAGGGCCCTCTCTCCCCAGCTGTTGGAAATTCCAAGTTAGAATGA 1374 0.4723 MSSIAAPAAVPDSTAPETAEAEMKTYWCHECDMSVALSSPSSSSSSSSSSSASSSTLLCPHCHTHFLELMDSPLFPQSDSHSHSLSLFDTTYLHYLIQHHLIPSGSDNDDEESDDVFPDPLTSRKSRSDSIPTILVTSSLLSQLDPGGVLCAVCKDPIGVDAEAKQLPCKHLYHSDCITPWLEHHNSCPLCRFQLVGEQEEEEEEGVSQGRRIRRQLRTAMVRLSELMEEDDDFYGLRTTLSHIASRHGVLSSRDAENPSASLDSTHTREPDEDSIAVGGNGDLEERRGCHGRLSLFKVLLLPFAISRKLEAVLVCIFIGSEEKFTWGIASNSNDGRDSETSFWYSCFHLFSKELLLGIGCLNVKEILEMCHHSLGDMLMKVGMFFLIQALVYVILSNSSNVFSKSSVKRSHSFKPARSVSIRRMLALLSDMPPEGEPSPNSSKGPLSPAVGNSKLE 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g2013 457 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
Sto7g2013 457 SUPERFAMILY RING/U-box 143 195 - -
Sto7g2013 457 MobiDBLite consensus disorder prediction 441 457 - -
Sto7g2013 457 Pfam zinc-ribbon 25 70 IPR039525 GO:0061630
Sto7g2013 457 MobiDBLite consensus disorder prediction 104 128 - -
Sto7g2013 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 24 268 - -
Sto7g2013 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 210 IPR013083 -
Sto7g2013 457 MobiDBLite consensus disorder prediction 431 457 - -
Sto7g2013 457 MobiDBLite consensus disorder prediction 252 283 - -
Sto7g2013 457 MobiDBLite consensus disorder prediction 266 283 - -
Sto7g2013 457 Pfam Ring finger domain 151 192 IPR001841 -
Sto7g2013 457 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 24 268 - -
Sto7g2013 457 SMART ring_2 151 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g2013 Sto-Chr7 25597624 25604607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g2013 19 195 C3H Transcription Factor Family AT3G60080 41.981 1.52e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g2013 K11982 - gmx:100775530 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g2013 7 25597624 25604607 Sto7g2013 7 25597624 25604607 ECH