Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1973 ATGACAAATTTCAAGCAAGATTACAGCTCGCTGCTGTTTTTGCTCTCACTTTGGCTACCACTGGAATCAGTGTCGGATTCAATTTCCTTGGGCGAGACTTCTTTAATGCACTTGCTAGACCAAGAACAATTCATGAAGCAACTATTTTACTACTTGTGTGGGTTTGCTGGAGGAATCCCGTTTTTTGTATTAAGAGATTATGGAAGAGAAACTCTTTCTTTGAGATGGAGGTCGTGGATGACAAGCTATTACATGGAACGCTATCTTAAGAATCAGAATTTCTataagattcaatcacaattaaTCATTGATAATCCAGACCAGCGAATTGTTGATGATCTGAGTTCTTTCACTGGGACAGCCCTCACATTGTCTCTGACACTCTTTAATTCTACTGTTGACTTGATCTCATTCAGTAACATCTTGTATGGCATCTATCCTCCTCTCTTTGTTGTCCTTCTCATTTACTCCATCAGTGGGACAGCTATTAGTGTTTATATCGGAAGGGGATTGGTGAATTTAAATTTCTTGCAAGAGAAAAAAGAAGCAGACTTTCGTTATGGGCTTGTACGGGTTCGAGAAAATGCTGAGTCAATTGCTTTCTATGGTGGTGAAGAAAGTGAAAAGCATCTTCTTCTGCAGTGCTTCAGAGGCGCTTTTGAAAATTTATCACAACTGCTGATCTCTTCTAGAAATCTGGCGTTCTTCACCAAAGGTTACCGCTATTTCATTCAAATTCTTCCTGCTGCCGTAGTTGCACCTATGTTTTTTTCAGGAAAAATTGAGATTGGTGTCATCAATCAGTCAGTCTCTGCTTTTAATCATATCCTCGAAGACATTTCCCTTATTGTGTACCAGTTTCAAGCTATAACTGCATTTTCTGCTGTTATTAATCGGCTTGGTCAATTTGATGATATTTTGAACAGTAGCTGCAGCACTAAATCACACTGTGATACCTCAAAAGACATATGTGTTACTTACAAAAGTTTGAAAAGTTCATCTGTTGTGGAATCCAATGGATTGTCCCCACCAGAAAAGGGTGAAACATTATTGGAGATAGAAAACTTGACTCTGAAGACACCAAATGAAGGCACACTTATTAGAGATTTGTCATTGACAGTCAAGGATAAGGAACATTTACTGATAATTGGACCAAGTGGAAGTGGCAAGACTTCTTTGTTAAGAGCTATAGCTGGTCTATGGTCTTCTGGAAATGGAAAAATCATCTATTATGAGAAAAATGGAGGAGATCCTCAGCAACCCATTTTTTCAGATGTGAATGCTCCTACAGTAAATACTGTTCATGATGCATATGAAAGACTTGGAAATTTTGTAAGCAAAAGTTCCAGAactttttttcttcctcaaaGGCCATACATGGTTTTGGGTACTCTTCGTCAACAATTACTTTATCCAACGTGGGCTGACAATGAAATCCCTATAGCAGACAGTATTAAATCAAAAAGAGTGCTTCCTTTTTTCATGAAATCATCAAActcagacaagaataaacaaccTAGGTTTCCAAGAACAGATGAGTTGATAATGGTCTTAGAGGATGTCTGCCTTGGCTATTTGTTGTCTCGATTCAGTTTGGATTCAACACATGATTGGTCAAGTGTTCTATCTCTGGGAGAGCAGCAACGGCTTGCTTTTGCCCGCCTTTTGCTTGCAAAACCTAAGTTGGTTTTATTGGATGAATCCACAAGCGCACTAGATGAACTCAATGAGGTTCATTTGTACAAGAAGATCGGAGCAGCAGGAGTAACATACATCAGCATTGGCCATCGACAGACCTTATACCACTACCACAACCGCATCTTGCGCATATCCACATTGGATTCTAACTGTAAAGAACCAAACTGGTGCATTGAATCCATTAGATGTCAATCCTCATAA 1899 0.3802 MTNFKQDYSSLLFLLSLWLPLESVSDSISLGETSLMHLLDQEQFMKQLFYYLCGFAGGIPFFVLRDYGRETLSLRWRSWMTSYYMERYLKNQNFYKIQSQLIIDNPDQRIVDDLSSFTGTALTLSLTLFNSTVDLISFSNILYGIYPPLFVVLLIYSISGTAISVYIGRGLVNLNFLQEKKEADFRYGLVRVRENAESIAFYGGEESEKHLLLQCFRGAFENLSQLLISSRNLAFFTKGYRYFIQILPAAVVAPMFFSGKIEIGVINQSVSAFNHILEDISLIVYQFQAITAFSAVINRLGQFDDILNSSCSTKSHCDTSKDICVTYKSLKSSSVVESNGLSPPEKGETLLEIENLTLKTPNEGTLIRDLSLTVKDKEHLLIIGPSGSGKTSLLRAIAGLWSSGNGKIIYYEKNGGDPQQPIFSDVNAPTVNTVHDAYERLGNFVSKSSRTFFLPQRPYMVLGTLRQQLLYPTWADNEIPIADSIKSKRVLPFFMKSSNSDKNKQPRFPRTDELIMVLEDVCLGYLLSRFSLDSTHDWSSVLSLGEQQRLAFARLLLAKPKLVLLDESTSALDELNEVHLYKKIGAAGVTYISIGHRQTLYHYHNRILRISTLDSNCKEPNWCIESIRCQSS 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1973 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto7g1973 632 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 7 625 - -
Sto7g1973 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 610 IPR027417 -
Sto7g1973 632 ProSitePatterns ABC transporters family signature. 542 556 IPR017871 GO:0005524
Sto7g1973 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 351 629 IPR003439 GO:0005524
Sto7g1973 632 SUPERFAMILY ABC transporter transmembrane region 26 303 IPR036640 GO:0005524|GO:0016021
Sto7g1973 632 Gene3D ABC transporter type 1, transmembrane domain 9 306 IPR036640 GO:0005524|GO:0016021
Sto7g1973 632 Pfam ABC transporter 368 570 IPR003439 GO:0005524
Sto7g1973 632 SMART AAA_5 376 614 IPR003593 -
Sto7g1973 632 Pfam ABC transporter transmembrane region 2 40 257 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto7g1973 632 Gene3D - 323 616 IPR027417 -
Sto7g1973 632 CDD ABCD_peroxisomal_ALDP 351 611 - -
Sto7g1973 632 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 7 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1973 Sto-Chr7 25222321 25238212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1973 40 632 Acyl Lipid Metabolism Gene Families AT1G54350 64.381 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1973 - - lja:Lj3g3v0937780.2 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1973 7 25222321 25238212 Sto7g1973 7 25222321 25238212 ECH