Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1943 ATGGAATCATTTTGTTGTAATGAGAATGGTGGTCAATGTGTGAGTAAAACCAAAAGGAAATACACTGCTCATGATGATGAGCAAAAATCATTTTCCAACGAAGATTTATATTTGACTTCGTTTGAGGAATTGAAGACGCGTGCTATTGGCTCAGATGGGCACTTCTATGAGTGTGTGAGGTGTGATGATGTTGGAAATTTATTGTGCTGCAACACATGTGCTTGTACTTATCATCTCCATTGCCTTAGTCCACCTCTAGAGTGTGTTCCTGAAGAAGATTGGCGATGCCCTAACTGCTATTACATTGACAACGtttctaaggatgtaatgactTCATATTTCAATTGTTCTTTATGTTCAAATATCAAGAAGATATTAATCTCGAGTGATGATAAGGAAGAAATGTCAAAATCTTGTTCTCCTAACCAGCCCAACTTATCGAATGGATTTCATGGAGGGCCTTTATTTTCTGCCGTTGACATTGATGTTAGTAATCTTTCGATTCTAAGGGCTAAGCATGCTtccaaacaaaaaggaaaaggaattaTGAAGAACACTCCTCGCAATAAAAAAGGGACCCGTTCAAGTTTAAAAGTAAATGTGCAAATGCGAAGTTCAGATCTTCAAGTGgtcaaatatggtgaaaatgtTCGATCTGATGCTTTAGCAAATAAGGGAATAGGTGCTCAACGTTCAACTTTAATGACTTCAAGTTGTGAGGATATCACCATTCCAAGTATTTTGTTATCCAAAAAGAATGGAGCCGATTCATCAGGTCATGCATCAAGTAAATCATATGGTAAAAACATTGACACTTTGCCTACTTCAGTAGAGAAAGTCACTTGGTCTGAAATCGAACTGGATGCTCTATGGGTTGGTGTTCGCCGATATGGTCAAGAGAATTGGGACACCATTTTGGCTGATTCATCTCTGAGAGTTCTGAAGTACAAAACCCCTCAAGATATGAGAATGAAATGGAAAGAGGAGCTTCACAAAATACTCTCATCAGTTTAA 1014 0.36 MESFCCNENGGQCVSKTKRKYTAHDDEQKSFSNEDLYLTSFEELKTRAIGSDGHFYECVRCDDVGNLLCCNTCACTYHLHCLSPPLECVPEEDWRCPNCYYIDNVSKDVMTSYFNCSLCSNIKKILISSDDKEEMSKSCSPNQPNLSNGFHGGPLFSAVDIDVSNLSILRAKHASKQKGKGIMKNTPRNKKGTRSSLKVNVQMRSSDLQVVKYGENVRSDALANKGIGAQRSTLMTSSCEDITIPSILLSKKNGADSSGHASSKSYGKNIDTLPTSVEKVTWSEIELDALWVGVRRYGQENWDTILADSSLRVLKYKTPQDMRMKWKEELHKILSSV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1943 337 SMART PHD_3 57 100 IPR001965 -
Sto7g1943 337 MobiDBLite consensus disorder prediction 177 196 - -
Sto7g1943 337 SUPERFAMILY Homeodomain-like 278 331 IPR009057 -
Sto7g1943 337 ProSiteProfiles Zinc finger PHD-type profile. 55 102 IPR019787 -
Sto7g1943 337 SUPERFAMILY FYVE/PHD zinc finger 50 100 IPR011011 -
Sto7g1943 337 CDD PHD2_CHD_II 58 99 - -
Sto7g1943 337 Gene3D - 282 335 - -
Sto7g1943 337 ProSiteProfiles Myb-like domain profile. 274 330 IPR001005 -
Sto7g1943 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 100 IPR013083 -
Sto7g1943 337 PANTHER PROTEIN CHROMATIN REMODELING 4 188 335 - -
Sto7g1943 337 PANTHER PROTEIN CHROMATIN REMODELING 4 23 124 - -
Sto7g1943 337 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 23 124 - -
Sto7g1943 337 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 188 335 - -
Sto7g1943 337 CDD SANT_TRF 282 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1943 Sto-Chr7 24967050 24976904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1943 63 113 C2H2 Transcription Factor Family AT3G01460 37.255 3.10e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1943 - - pop:7492956 100.908