Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto7g1932 | ATGGAGCGCTCCTTGATTATAGCAGCAGTAGAGAAAGATGTCAGTGCTGATCGTGACCAGCTTAGGAGACCTAGTGGTCGATCTATTCACCGACAGGTGCCCCTTGACATGCAAAAATTTCTTGAAGCTTTGCAAAAGAGTTTCAAGagtataaatatatttgtatcgTTGCGTATGTTAATAAATTTAGCTATGGCTCATAAGATACTTTATTTTGTACCCTGGATCAAGTACTACAATGGGTGTTTATTTCACACAGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATTGGTAGTGGTGGTGATTCAATCTACAAATTTCTCTATGGTGACCAAGCTCGTTTTTTCAGTGACGAGATTCATATTGACTTGAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCCGGAGAGAACCTAAATGCTTCCCAGTTCTACATCACTCTGCGTGATAATCTTGATTACCTTGATGGAAAGCACACTGTGTTTGGTGAGGTAGCTGAAGGACTTGAGACTTTAACAAGAATAAATGAGGCTTATGTGGATGAGAAGGGCAGACCTTATAAAAATATCCGAATCAAGCACACTTACATCCTAGATGATCCTTTTGATGATCCTCCTCAGCTAACTGAGTTCATTCCTGATGCTTCGCCAGAAGGAAAGCCAAAAGATGAGATTGTTGATGAAGTGCGGCTTGAAGATGATTGGGTACCTATGGATGAACAATTAGATCCAACAGAGCTTGAGGAGGTTATTAGAGCTAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGATAATGTGCTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGACGATTTGCATACAATATTTTCACGCTTTGGGACTGTTGTTTCGGCTGAAATTATCCGTGACCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGAACCAACAGGCATGTGAACAAGCATATTTTAAGATGGATAATGCTCTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAGAGTGTTGCAAAATTGTGGTCGCAATATAGGCGCAAAGGTCAATCGGGTAATAAGGGTTGCTTCAAATGCGGTTCTTCAGATCATGTTGCCAAGGATTGCACTGAGGATGCTAAGAATCAACAGAGTGCaaaatacattttgaaggacGATAATGCTCAACGAGGTGGAGAGAATATGAGATATGAAATGGTTTTTGATGGAGACCAACATGAAAGTCGAAGTCCAAGACAAGGAACAAAACGCAGGGGGCATGACAGGGATGATCTAATGGAAAGAAAAAGTAAGATGGTAGGCTCAGACAACAAAGATAGGTATGGTGATAGAAGCAAAGGACGATACGAAAGAAGCACGAGGGATTCGGATTACCATGCAGAGAGGAAAGATAGATCAGAAAAGCATACAGAAAGACATAGAGGAGATGACTATGGCCGGAAAGATGATCGAGActcaagaaagaaaaatgtgGAAGATAGCCATGTTGAAAGGAGGACTAGTGGAGATTACAGGAGGAAAACAGATTCTAGCCATGGAGAGAGAAGAGTTGAGAGGGAAAGTGGTAGAGATGATGGagataagagaaagaagaatggtACAGCCGATGATGATAGCCATGAAGACAAGAGGAGGATGGATGACAGAGATCATAGGAAAAGACATGAAGATCGAGGCAGGCAACATGTGAATAATGAGTctagaggaagaaaaagaagccCAGATGATGCAGATTACAGGCGTCAAAGGGAAGAACGAGGACATAGAAGAGACCTTGAATTCAACGATGATCGTCACAGGAGGCATCATAGTAGAGACAGGAGATGA | 1905 | 0.3995 | MERSLIIAAVEKDVSADRDQLRRPSGRSIHRQVPLDMQKFLEALQKSFKSINIFVSLRMLINLAMAHKILYFVPWIKYYNGCLFHTVQKDFTAQTGDPTGIGSGGDSIYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDNLDYLDGKHTVFGEVAEGLETLTRINEAYVDEKGRPYKNIRIKHTYILDDPFDDPPQLTEFIPDASPEGKPKDEIVDEVRLEDDWVPMDEQLDPTELEEVIRAKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDDDLHTIFSRFGTVVSAEIIRDHKTGDSLCYAFIEFENQQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKGQSGNKGCFKCGSSDHVAKDCTEDAKNQQSAKYILKDDNAQRGGENMRYEMVFDGDQHESRSPRQGTKRRGHDRDDLMERKSKMVGSDNKDRYGDRSKGRYERSTRDSDYHAERKDRSEKHTERHRGDDYGRKDDRDSRKKNVEDSHVERRTSGDYRRKTDSSHGERRVERESGRDDGDKRKKNGTADDDSHEDKRRMDDRDHRKRHEDRGRQHVNNESRGRKRSPDDADYRRQREERGHRRDLEFNDDRHRRHHSRDRR | 634 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto7g1932 | 634 | MobiDBLite | consensus disorder prediction | 427 | 626 | - | - | |
| Sto7g1932 | 634 | Gene3D | - | 374 | 452 | - | - | |
| Sto7g1932 | 634 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 49 | 203 | IPR002130 | GO:0000413|GO:0003755 | |
| Sto7g1932 | 634 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 | 76 | 534 | IPR035542 | - | |
| Sto7g1932 | 634 | MobiDBLite | consensus disorder prediction | 427 | 634 | - | - | |
| Sto7g1932 | 634 | SMART | c2hcfinal6 | 381 | 397 | IPR001878 | GO:0003676|GO:0008270 | |
| Sto7g1932 | 634 | CDD | RRM_PPIL4 | 282 | 364 | - | - | |
| Sto7g1932 | 634 | SUPERFAMILY | Cyclophilin-like | 77 | 215 | IPR029000 | - | |
| Sto7g1932 | 634 | Pfam | Zinc knuckle | 381 | 397 | IPR001878 | GO:0003676|GO:0008270 | |
| Sto7g1932 | 634 | Gene3D | - | 236 | 367 | IPR012677 | - | |
| Sto7g1932 | 634 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 285 | 363 | IPR000504 | GO:0003723 | |
| Sto7g1932 | 634 | CDD | cyclophilin_RRM | 76 | 211 | IPR035538 | - | |
| Sto7g1932 | 634 | SUPERFAMILY | RNA-binding domain, RBD | 271 | 381 | IPR035979 | GO:0003676 | |
| Sto7g1932 | 634 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 287 | 357 | IPR000504 | GO:0003723 | |
| Sto7g1932 | 634 | Gene3D | - | 29 | 214 | IPR029000 | - | |
| Sto7g1932 | 634 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 84 | 96 | IPR002130 | GO:0000413|GO:0003755 | |
| Sto7g1932 | 634 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 134 | 149 | IPR002130 | GO:0000413|GO:0003755 | |
| Sto7g1932 | 634 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 163 | 178 | IPR002130 | GO:0000413|GO:0003755 | |
| Sto7g1932 | 634 | ProSiteProfiles | Zinc finger CCHC-type profile. | 382 | 397 | IPR001878 | GO:0003676|GO:0008270 | |
| Sto7g1932 | 634 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 32 | 201 | IPR002130 | GO:0000413|GO:0003755 | |
| Sto7g1932 | 634 | SMART | rrm1_1 | 286 | 359 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto7g1932 | Sto-Chr7 | 24832667 | 24843097 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto7g1932 | 78 | 208 | U-box Gene Family | AT5G67530 | 41.221 | 3.78e-23 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto7g1932 | K12735 | - | gmx:100776900 | 761.525 |