Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1903 ATGCCGCTTCCGACGAAATCAATCAAGGCTCCTCAGGAAGTCGGTGGAACCGTCAAGGATTTCGACGATCCTGAGACCCCATCCAACAATTTGTGGGTCGGGAATTTGTCGTTCGAGGTGACGGAGTCCGATCTTATGGCTCTCTTCGCCCAGTACGGCGCTCTCGATAGCGTCACGTCGTATTCCTCCCGGAGTTACGGCTTCGTGTTCTTCAAGCGCATCGAAGATGCCAAGGCGGCGAAGAACGCGTTGCAAGGCACCGTTCTGCGTGGAATCCCGATAAAAATTGAGTTTGCGAGACCGGTTCGTTCTGATCTTTGTGCTTTGTTAGGCAGGATATCCTTTAATAGCAGTTTCAGTGAATTTTTGGGACTTCTGTATGAATTTAATGGTAGCATTGGTCAGAAATCTCTAAGAGCAGTATATTTTTGGGCAAAGCCATGTAAACATCTTTGGGTGGGTGGCATTAGTCCAGCTGTTACAAAAGAAGAATTGGAAGTTGAATTTCGTAAATTTGGGAAAATTGAGGATTTTAAGTTCCTCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTGGATGATGCTATTCAGGCCATGAAAGTAATGAATGGGAAGTCTATTGGCGGGGACCAAATTCGTGTAGACTTTCTTCGTTCACAATCCTCAAAAAAAATGGTGATGACTCATGGCTGCATCTATGAAGTAGTTTTGATTAGGTTAACAAAAGGTTGTTGGTTGAACATAATGCAGTCTGGAATGGTGTTTCTTGTATTCACTAATTATCCATATTTGATAGAGTTCTTGGACATGAGCTGTATCAGCAGCATTGTGATTATTTTGGATCTTTATGCTGTTAATCGAGTCCTTTTGGATATGTTGCTTGATTATGGGCAGTTTCAGGGAAAAAGCATGGGGCCTACTGATTCCTATTCTGGTCAGAAAAGACCATTGATTGATGAGCAAATGCTTCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGCACTACTCATTTGTGGAATTTAGGAGTGTTGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGACTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATTTGGCACCTGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAAAGGACCTAGACCTGACATGCTTTTAAATGAGCATCCTTTTCGATCCATGCAGATGGATGTGTTTGGTCATAATCGTCCAGTGGTACCAAATAATTTTCCTGGACAGTTAGCGCCTGGTGTTATTATTGGACCAAATGTATCATTGAGGccttttggtcctcaaggtaATCTTGAACCGTTGATTTCAGGCAGTGAGTTTAATGATCTGGGCACGAACCAAAAATTTCAGGATGGTAGCTCCAAAAGTCAAATAGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTCCATCTCCGGCACCTGGTATCAGGCCTCCTGCTAGATCCACATCTGGTGCATGGGATGTGCTTGACATAAACCAATTTCAGAGGGATTCTAAACGTTCAAGGATAGATGGAGCCTTACCCATTGATGATGCTCCATTTCCTTTAAGGAATGTTGATGATCGTGGTTTAGGACTAGAACAATCTTATGGGATGGAGCCAATTGATGGTGGTTCCAGTCCATTTGTAAACATCCAAGGAAAGACCCACCTTGGTCCAGTGGGAACAAGGATCACAGCTGGAGTACCTGCTCCTGTTCAACCTGATATTGATCATATAGGGCGTGGGATTATTGCAAAAGGGGGAACACCTGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGTCTGAACTTCCTGAAGTTGTTGATTGCTCAGCCAGGACAGGACTGGATATGCTCACAAAACACTATGCAGATGCTATTGGTTGTGACATTGTTTTCTTCTACCCGATAGTGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTATCTTGGTGCAAAAAACCGAGCTGGTGTTGCCAAATTTGTTGATGGAACTACCCTATTCTTGGTGGTACACCAATGCAACAATCGTTTCCTTTGCCTATAACTTCGACTCAATTACAACAGAATGTTTGCATGAGGAGTCTAAGCTTCCTGCAAAACAACTTTATCCAGCTGCAGGTGGTCCCCCTCTAGTTCAGTCAGTACCCCCAGACTATACTTCTAGTAATACTGCTGCAGCAACTCAACCTGGAGTTTCATTAACACCTGAGCTTATTGCCACTCTAGCCTCTTTTCTTCCTGGAGCTACGCAAGCATCCACCACTGATGGTGCTAAGCCAGCAGTAGGCTCCTCAACTATGAAACCTCCATTTCCTTCAGTGCCTCCTACTGATGGAAACCAATCTCATTTATGGAAACATGATCATCAAATTGTAGATCCATCTAGTCATGTCCCTCAACAAGTGGGGAGTACATACTATCAGCCTTATCCACTATCATCTACTCATGGCCATCCTGGTCAAGTGGTCCATGGTAATTCTCATATCCAAGACTCAGCTGCCAGCCTACAGCAGCAGGGTGCTATTTCATCTAGACCCGTGACTAATTTCTTAATACCTTCTCAAAGTGGGCAGCTAGCTGTATCCCCCCAGGTGAATCACCAGTATCAAGTTGAAGTCTCCCCCAGCTCTCAGAAAGGCTATGGGCTGGTGCAGGGAACTGACGCATCTGGTTTATATAGTTCTCAGGCTTTTCAGCAACCTAGTATTCCTATGGCCTCATCTAATCAAGTTCATGGTGCTAACCCTTTACAGCAACAAACATCCATGCCATATTCAGCAAATACAGTGAACTCAGAGCTTCCAAATCAACAATTTCAATCTGCTCTCCTTGGAGCTAGTCAGGGCACATCAGAAGGGGAGGCTGATAAAAACCAGAGGTACCAGTCAACGTTACAGTTTGCTGCCAATCTTCTCCTTCAAATACAGCAGCAGCAACAGCAACCCCAGGGAGGACGTGGGCATGGAAATCAACAATGA 3060 0.4373 MPLPTKSIKAPQEVGGTVKDFDDPETPSNNLWVGNLSFEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRIEDAKAAKNALQGTVLRGIPIKIEFARPVRSDLCALLGRISFNSSFSEFLGLLYEFNGSIGQKSLRAVYFWAKPCKHLWVGGISPAVTKEELEVEFRKFGKIEDFKFLRDRNTAFVEYFNLDDAIQAMKVMNGKSIGGDQIRVDFLRSQSSKKMVMTHGCIYEVVLIRLTKGCWLNIMQSGMVFLVFTNYPYLIEFLDMSCISSIVIILDLYAVNRVLLDMLLDYGQFQGKSMGPTDSYSGQKRPLIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLAPGKDYPGFYPGSKGPRPDMLLNEHPFRSMQMDVFGHNRPVVPNNFPGQLAPGVIIGPNVSLRPFGPQGNLEPLISGSEFNDLGTNQKFQDGSSKSQIGPNWKRPSPPAPGMLPSPAPGIRPPARSTSGAWDVLDINQFQRDSKRSRIDGALPIDDAPFPLRNVDDRGLGLEQSYGMEPIDGGSSPFVNIQGKTHLGPVGTRITAGVPAPVQPDIDHIGRGIIAKGGTPVCQARCVPIGKGIGSELPEVVDCSARTGLDMLTKHYADAIGCDIVFFYPIVKMILLHTLNFFAILVQKTELVLPNLLMELPYSWWYTNATIVSFAYNFDSITTECLHEESKLPAKQLYPAAGGPPLVQSVPPDYTSSNTAAATQPGVSLTPELIATLASFLPGATQASTTDGAKPAVGSSTMKPPFPSVPPTDGNQSHLWKHDHQIVDPSSHVPQQVGSTYYQPYPLSSTHGHPGQVVHGNSHIQDSAASLQQQGAISSRPVTNFLIPSQSGQLAVSPQVNHQYQVEVSPSSQKGYGLVQGTDASGLYSSQAFQQPSIPMASSNQVHGANPLQQQTSMPYSANTVNSELPNQQFQSALLGASQGTSEGEADKNQRYQSTLQFAANLLLQIQQQQQQPQGGRGHGNQQ 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1903 1019 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676
Sto7g1903 1019 CDD RRM3_Spen 151 220 - -
Sto7g1903 1019 SMART rrm1_1 150 217 IPR000504 GO:0003723
Sto7g1903 1019 SMART rrm1_1 30 97 IPR000504 GO:0003723
Sto7g1903 1019 SMART rrm1_1 289 377 IPR000504 GO:0003723
Sto7g1903 1019 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 94 IPR000504 GO:0003723
Sto7g1903 1019 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 215 IPR000504 GO:0003723
Sto7g1903 1019 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 374 IPR000504 GO:0003723
Sto7g1903 1019 SUPERFAMILY RNA-binding domain, RBD 320 401 IPR035979 GO:0003676
Sto7g1903 1019 Gene3D - 141 229 IPR012677 -
Sto7g1903 1019 Gene3D - 311 384 IPR012677 -
Sto7g1903 1019 Gene3D - 15 105 IPR012677 -
Sto7g1903 1019 PANTHER RNA RECOGNITION MOTIF-CONTAINING 19 661 - -
Sto7g1903 1019 PANTHER RNA RECOGNITION MOTIF-CONTAINING 716 1019 - -
Sto7g1903 1019 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 716 1019 - -
Sto7g1903 1019 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 19 661 - -
Sto7g1903 1019 MobiDBLite consensus disorder prediction 778 809 - -
Sto7g1903 1019 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 381 IPR000504 GO:0003723
Sto7g1903 1019 MobiDBLite consensus disorder prediction 471 511 - -
Sto7g1903 1019 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Sto7g1903 1019 SUPERFAMILY RNA-binding domain, RBD 145 224 IPR035979 GO:0003676
Sto7g1903 1019 MobiDBLite consensus disorder prediction 486 504 - -
Sto7g1903 1019 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 221 IPR000504 GO:0003723
Sto7g1903 1019 CDD RRM3_Spen 31 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1903 Sto-Chr7 24604417 24612132 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1903 30 226 Eukaryotic Initiation Factors Gene Family AT2G23350 27.053 9.19e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1903 - - gmx:100777570 873.233