Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1896 ATGCCGCTTCCGACGAAATCAATCAAGGCTCCTCAGGAAGTCGGTGGAACCGTCAAGGATTTCGACGATCCTGAGACCCCATCCAACAATTTGTGGGTCGGGAATTTGTCGTTCGAGGTGACGGAGTCCGATCTTATGGCTCTCTTCGCCCAGTACGGCGCTCTCGATAGCGTCACGTCGTATTCCTCCCGGAGTTACGGCTTCGTGTTCTTCAAGCGCATCGAAGATGCCAAGGCGGCGAAGAACGCGTTGCAAGGCACCGTTCTGCGTGGAATCCCGATAAAAATTGAGTTTGCGAGACCGGTTCGTTCTGATCTTTGTGCTTTGTTAGGCAGGATATCCTTTAATAGCAGTTTCAGTGAATTTTTGGGACTTCTGTATGAATTTAATGGTAGCATTGGTCAGAAATCTCTAAGAGCAGTATATTTTTGGGCAAAGCCATGTAAACATCTTTGGGTGGGTGGCATTAGTCCAGCTGTTACAAAAGAAGAATTGGAAGTTGAATTTCGTAAATTTGGGAAAATTGAGGATTTTAAGTTCCTCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTGGATGATGCTATTCAGGCCATGAAAGTAATGAATGGGAAGTCTATTGGCGGGGACCAAATTCGTGTAGACTTTCTTCGTTCACAATCCTCAAAAAAAATGGTGATGACTCATGGCTGCATCTATGAAGTAGTTTTGATTAGGTTAACAAAAGGTTGTTGGTTGAACATAATGCAGTCTGGAATGGTGTTTCTTGTATTCACTAATTATCCATATTTGATAGAGTTCTTGGACATGAGCTGTATCAGCAGCATTGTGATTATTTTGGATCTTTATGCTGTTAATCGAGTCCTTTTGGATATGTTGCTTGATTATGGGCAGTTTCAGGGAAAAAGCATGGGGCCTACTGATTCCTATTCTGGTCAGAAAAGACCATTGCAAACACATCCTTCGGTTGGGAGGAAAGGGGATGGTCAACCTAGCAATGTTTTGTGGATAGGCTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTTCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGCACTACTCATTTGTGGAATTTAGGAGTGTTGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGACTTTTTAATGATCCTCGAATAACAATTATGTATTCAAGCAGTGATTTGGCACCTGGCAAAGATTACCCTGGCTTTTATCCTGGAATGGTACCAAATAATTTTCCTGGACAGTTAGCGCCTGGTGTTATTATTGGACCAAATGTATCATTGAGGccttttggtcctcaaggtaATCTTGAACCGTTGATTTCAGGCAGTGAGTTTAATGATCTGGGCACGAACCAAAAATTTCAGGATGGTAGCTCCAAAAGTCAAATAGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTCCATCTCCGGCACCTGGTATCAGGCCTCCTGCTAGATCCACATCTGGTGCATGGGATGTGCTTGACATAAACCAATTTCAGAGGGATTCTAAACGTTCAAGGATAGATGGAGCCTTACCCATTGATGATGCTCCATTTCCTTTAAGGAATGTTGATGATCGTGGTTTAGGACTAGAACAATCTTATGGGATGGAGCCAATTGATGGTGGTTCCAGTCCATTTGTAAACATCCAAGGAAAGACCCACCTTGGTCCAGTGGGAACAAGGATCACAGCTGGAGTACCTGCTCCTGTTCAACCTGATATTGATCATATATGGCGTGGGATTATTGCAAAAGGGGGAACACCTGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGTCTGAACTTCCTGAAGTTGTTGATTGCTCAGCCAGGACAGGACTGGATATGCTCACAAAACACTATGCAGATGCTATTGGTTTTGACATTGTTTTCTTTCTACCCGATAGTGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTATCTTGGTGCAAAAAACCGAGCTGGTGTTGCCAAATTTGTTGATGGAACTACCCTATTCTTGGTACCACCTTCTGAATTTTTAACAAAGGTTTTAAAAGTCACGGGGCCGGAACGTCTATATGGTGTGGTTCTTAAGTTTTCATCTGGGTCAGGTGGTACACCAATGCAACAATCGTTTCCTTTGCCTATAACTTCGACTCAGTTTGTTGATAGGCCTCAGGTTGCTCCTTCGCAAGTAGAATATGGTCTGATCCCTGCAAAGGAGGAACAAGTTTTGCCAGTAGATTACAACAGAATGTTGCATGAGGAGTCTAAGCTTCCTGCAAAACAACTTTATCCAGCTGCAGGTGGTCCCCCTCTAGTTCAGTCAGTACCCCCAGACTATACTTCTAGTAATACTGCTGCAGCAACTCAACCTGGAGTTTCATTAACACCTGAGCTTATTGCCACTCTAGCTCTTTTCTTCCTGGAGCTACGCAAGCATCCACCACTGTGGTGCTAG 2526 0.4323 MPLPTKSIKAPQEVGGTVKDFDDPETPSNNLWVGNLSFEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRIEDAKAAKNALQGTVLRGIPIKIEFARPVRSDLCALLGRISFNSSFSEFLGLLYEFNGSIGQKSLRAVYFWAKPCKHLWVGGISPAVTKEELEVEFRKFGKIEDFKFLRDRNTAFVEYFNLDDAIQAMKVMNGKSIGGDQIRVDFLRSQSSKKMVMTHGCIYEVVLIRLTKGCWLNIMQSGMVFLVFTNYPYLIEFLDMSCISSIVIILDLYAVNRVLLDMLLDYGQFQGKSMGPTDSYSGQKRPLQTHPSVGRKGDGQPSNVLWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDLAPGKDYPGFYPGMVPNNFPGQLAPGVIIGPNVSLRPFGPQGNLEPLISGSEFNDLGTNQKFQDGSSKSQIGPNWKRPSPPAPGMLPSPAPGIRPPARSTSGAWDVLDINQFQRDSKRSRIDGALPIDDAPFPLRNVDDRGLGLEQSYGMEPIDGGSSPFVNIQGKTHLGPVGTRITAGVPAPVQPDIDHIWRGIIAKGGTPVCQARCVPIGKGIGSELPEVVDCSARTGLDMLTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSEFLTKVLKVTGPERLYGVVLKFSSGSGGTPMQQSFPLPITSTQFVDRPQVAPSQVEYGLIPAKEEQVLPVDYNRMLHEESKLPAKQLYPAAGGPPLVQSVPPDYTSSNTAAATQPGVSLTPELIATLALFFLELRKHPPLWC 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1896 841 SMART rrm1_1 336 404 IPR000504 GO:0003723
Sto7g1896 841 SMART rrm1_1 30 97 IPR000504 GO:0003723
Sto7g1896 841 SMART rrm1_1 150 217 IPR000504 GO:0003723
Sto7g1896 841 CDD RRM3_Spen 151 220 - -
Sto7g1896 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 94 IPR000504 GO:0003723
Sto7g1896 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 215 IPR000504 GO:0003723
Sto7g1896 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 401 IPR000504 GO:0003723
Sto7g1896 841 MobiDBLite consensus disorder prediction 485 503 - -
Sto7g1896 841 Pfam SPOC domain 596 712 IPR012921 -
Sto7g1896 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 408 IPR000504 GO:0003723
Sto7g1896 841 Gene3D - 15 105 IPR012677 -
Sto7g1896 841 Gene3D - 141 229 IPR012677 -
Sto7g1896 841 SUPERFAMILY RNA-binding domain, RBD 8 103 IPR035979 GO:0003676
Sto7g1896 841 MobiDBLite consensus disorder prediction 307 331 - -
Sto7g1896 841 Gene3D - 324 412 IPR012677 -
Sto7g1896 841 MobiDBLite consensus disorder prediction 460 511 - -
Sto7g1896 841 MobiDBLite consensus disorder prediction 461 483 - -
Sto7g1896 841 CDD RRM3_Spen 337 406 - -
Sto7g1896 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Sto7g1896 841 SUPERFAMILY RNA-binding domain, RBD 319 408 IPR035979 GO:0003676
Sto7g1896 841 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 19 829 - -
Sto7g1896 841 SUPERFAMILY RNA-binding domain, RBD 145 224 IPR035979 GO:0003676
Sto7g1896 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 221 IPR000504 GO:0003723
Sto7g1896 841 PANTHER RNA RECOGNITION MOTIF-CONTAINING 19 829 - -
Sto7g1896 841 CDD RRM3_Spen 31 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1896 Sto-Chr7 24556440 24563449 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1896 30 226 Eukaryotic Initiation Factors Gene Family AT2G23350 27.053 1.88e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1896 - - gmx:100777570 867.84