Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1876 ATGATGGATCACCAATCTGGCCAAGGATTTGATTCAAATAAAAGCAATTTTGATTTGCAAGAAGAAATTAGTGAAAAAAACAAGAAAGTGGATGAACTTTCACAAAACATGGAATTCTGTGATGGTGAAGATGAACAATCTGTTGCAGATATTTTGGCAAATGCTGAAACTTCAGAACCATTTGTTGGCATGGAGTTCAATTCAAGAGATGAAGCCAGAGAATTCTATATCGCATATGGTAGGAGGATAGGTTTTACTGTACGAATACATCATAACCGCCGTTCAAGAGTTAATAATCAGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGTTTTCGTGCAAAGAAGTATGTATATAGAAAAGATAGAGTGCTTCCTCCTCCGCCTGTCACCAGAGAAGGTTGTCAGGCTATGGTAAGGTTGGCTTTACGGGATGGAGGGAGGTGGGTGGTTACCAAATTTGTGAAGGAGCATACTCATAAATTAATGAGTCCTAGTAAAGTTCCATGGAGAGGATCTGGAAAGCACTTGGTTAGTGAGATTTGCTTGACCCCTGGGCGGAATGGGTTGTCTTCCTCTGTGACCTCTAGCTGGTTGGCCATGAATCTGCCAACAAGTCTCCCTGGTGTGCCTCGGCTTGCCACAATAATCACAGTCATTTACCCTTCTTCACAGGATGAGAAAGATAAGAGAATCCGTGAGCTATCCCTTGAGCTGTACAACGAAAGGCAAAAATGCAAGCGACGGTGTGCTGCATATGAAGAACAATTAAATATGATTCTGAACGATTTGGAAAAGCACACAGAACACATCTCCAAAAAAGTAGCTGACATAGTCGAAAGTATAAGAGAGATTGAGGAGGAGAAATCCGGTTCAGATGTTAACCCTCCCGTCCCCATCGGCGTCCACCTTCATTATCATCCTCTTGCAATCCTCGGCGGTTCTCCCTTGCTTCAGCCCCAGCGACGCCAGCACCGCTCTCAACTCGTCGACGGTGATGAACCCGTCGCCGTTCTGGTCGAACACGTTGAACGCCTCCTTCATGTCCTCCTCCTCGTCGCGCTCGTCCATCAGCGACTGGTACAGCTCCCCGAACTCCTCCACGTCCACGCACTGGTCGCCGTTCACGTCGATCTTGTCGATCATCTGCTGCAGATCCTCGTCCGGGATGAAGATCCCCATGTTCTCCAGGGAGTCGTTGAGCTCCTTCTTCGTGATCCGCCCGTCCCCGTTGCGATCAAACATCTGGAATACGCGCTTGATCTCAACGGGGTCCATTAA 1284 0.4673 MMDHQSGQGFDSNKSNFDLQEEISEKNKKVDELSQNMEFCDGEDEQSVADILANAETSEPFVGMEFNSRDEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDRVLPPPPVTREGCQAMVRLALRDGGRWVVTKFVKEHTHKLMSPSKVPWRGSGKHLVSEICLTPGRNGLSSSVTSSWLAMNLPTSLPGVPRLATIITVIYPSSQDEKDKRIRELSLELYNERQKCKRRCAAYEEQLNMILNDLEKHTEHISKKVADIVESIREIEEEKSGSDVNPPVPIGVHLHYHPLAILGGSPLLQPQRRQHRSQLVDGDEPVAVLVEHVERLLHVLLLVALVHQRLVQLPELLHVHALVAVHVDLVDHLLQILVRDEDPHVLQGVVELLLRDPPVPVAIKHLEYALDLNGVH 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1876 427 PANTHER FAR-RED IMPAIRED RESPONSE-LIKE PROTEIN 225 294 - -
Sto7g1876 427 PANTHER FAR-RED IMPAIRED RESPONSE-LIKE PROTEIN 2 182 - -
Sto7g1876 427 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Sto7g1876 427 Coils Coil 16 36 - -
Sto7g1876 427 MobiDBLite consensus disorder prediction 1 17 - -
Sto7g1876 427 MobiDBLite consensus disorder prediction 1 28 - -
Sto7g1876 427 Coils Coil 244 271 - -
Sto7g1876 427 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 182 - -
Sto7g1876 427 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 225 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1876 Sto-Chr7 24360350 24368700 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto7g1876 FAR1 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1876 - - gmx:100810283 412.92