LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto7g1795	ATGACCTCTTCCCAAGGATATCATCAACCCTCGACGATCGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTCGACGAAACCTACCTCAGTCACTGCTTTGCTCACACAGGCGAGGTAGTTTCCATAAAGATCATACGTAACAAGATCACCGGACAGCCTGAAGGCTATGGGTTTGTGGAGTTCGTTTCCCATGCAGCAGCAGAGCGGATTCTGCAGACTTACAATGGGACACAAATGCCGGGAACAGAACAAACTTTCAGGTTGAATTGGGCATCTTTTGGCATTGGGGAGAGGCGACCTGATGCTGGGCCCGAGCACTCAATTTTTGTGGGGGATCTAGCACCTGATGTTACTGATTATCTTCTACAGGAGACATTTCGAGCTCACTATCCTTCAGTTAGAGGTGCCAAAGTGGTGACTGATCCTAATACCGGGCGCTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCGATGACTGAAATGAATGGTGTTTATTGCTCAAGCAGGCCAATGCGTATCAGTGCTGCAACCCCAAAGAAGACCACTGGTTTTCAACAGCAGTATGCTGCTGCTAAAGCTATATATCCAGTCCCAGCATATACCACCCCAGTAAATACAGTTCCACCAGAGTATGATGTGAATAATACCACCGTTTTTGTTGGTAATTTGGATCTTACTATCACAGAAGAGGAGTTGAAACAAACCTTCTTgcaatttggggaaattgtatCTGTCAAGATTCATCCTGGCAAAGGATTTGGTTTTATTCAATTTGCGACAAGAGTATCTGCTGAAGAAGCCATTCAGAGAATGCAGGGAAAGATGATGGGTCAACAAGTGCTCCGAGTTTCTTGGGGTAGGAGCCTAACAGCAAGACAGGACGTGCCTGGTGGCTGGGGGCAACAGATGGATCCAAGTCAATGGAGTGCCTACTATGGATATGGACAGGGCTATGAAGCCTATGCTTATGGTGCGGCTCAGGATCCTTCCTTGTATGCATATGGTGCATATGCTGGTTATACACAGTACCCCCAACAGGTGGAAGGAGCTCAAGACATGGCATCTATGGCAATGCCTAATATGGAACAAAGGGAAGAGTTGTATGAGCCCCTAGCCATGCCTGACGTGGATAAGCTAAATGCAGCATATCTATCAGTACATGGAAGTGCCATTTTAGGACGGTCCCTGTGGTTGAGAACTTCCTCGCCATTCTTACAGCAAGCTTAG	1260	0.4611	MTSSQGYHQPSTIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAIYPVPAYTTPVNTVPPEYDVNNTTVFVGNLDLTITEEELKQTFLQFGEIVSVKIHPGKGFGFIQFATRVSAEEAIQRMQGKMMGQQVLRVSWGRSLTARQDVPGGWGQQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYTQYPQQVEGAQDMASMAMPNMEQREELYEPLAMPDVDKLNAAYLSVHGSAILGRSLWLRTSSPFLQQA	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto7g1795	419	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	110	189	IPR000504	GO:0003723
	Sto7g1795	419	PANTHER	POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED	8	357	-	-
	Sto7g1795	419	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	229	292	IPR000504	GO:0003723
	Sto7g1795	419	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	112	181	IPR000504	GO:0003723
	Sto7g1795	419	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	19	87	IPR000504	GO:0003723
	Sto7g1795	419	SMART	rrm1_1	111	185	IPR000504	GO:0003723
	Sto7g1795	419	SMART	rrm1_1	18	93	IPR000504	GO:0003723
	Sto7g1795	419	SMART	rrm1_1	228	295	IPR000504	GO:0003723
	Sto7g1795	419	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	227	299	IPR000504	GO:0003723
	Sto7g1795	419	CDD	RRM1_SECp43_like	18	98	-	-
	Sto7g1795	419	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	17	97	IPR000504	GO:0003723
	Sto7g1795	419	SUPERFAMILY	RNA-binding domain, RBD	103	198	IPR035979	GO:0003676
	Sto7g1795	419	SUPERFAMILY	RNA-binding domain, RBD	8	85	IPR035979	GO:0003676
	Sto7g1795	419	Gene3D	-	213	305	IPR012677	-
	Sto7g1795	419	Gene3D	-	16	96	IPR012677	-
	Sto7g1795	419	CDD	RRM2_SECp43_like	109	188	-	-
	Sto7g1795	419	SUPERFAMILY	RNA-binding domain, RBD	207	328	IPR035979	GO:0003676
	Sto7g1795	419	PANTHER	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	8	357	-	-
	Sto7g1795	419	Gene3D	-	98	203	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto7g1795	Sto-Chr7	23424425	23430273	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto7g1795	16	304	Eukaryotic Initiation Factors Gene Family	AT1G49760	25.246	3.91e-20	90.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto7g1795	-		-	cam:101496574	717.998