Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1269 ATGAACCCGGATCATACGGAATCCTCAACGGCATCGTATTGGTGCTACAGATGCACCCGCTTTGTTCGTCTCTCGTGTGCTCATCATCAGAACCACATCACTTGTCCACACTGCGATAGTGGCTTCGTCGAAGAGATCCAGGCCAACCCATCATCATCACCGAACCATCATCCTCTCAGCCCATTCCCATCTGGAGAGGCCATGTCCTTGATGTTCGCCGACGAACCTCAAAATCCATTCAATTCGAGAAGACAAGGGTTCCGAAGAAGACGCCGCAACGGCAGCATCCGGTCTCCCTTCAATCCAGTAATCGTTCTCCGTGGAGCCGCCGACGACGACGGAGGAGATCAAGAGAGGAGTAGTAGCAGCTTCGAGTTGTACTACGACGACGGAGATGGCTCCGGTCTCCGACCTCTGCCGCCGACCGTGTCGGAGTTTCTGCTTGGGTCAGGCTTCGATCGGTTGTTGGAGCAGTTTTCCGAGATGGAAGCGAATGGTCTTGGGCGGTCGGAGAATCTGCCGGCGTCCAAGACGGCGATTGAATCAATGCCGACGATTGAGATTGTGGAGGACCATGTAAGTACGGATACGCACTGTGCTATTTGTAAAGAAGCCTTCGAGCTGGGCTCGAAGGCGCGTGAAATGCCGTGTAAGCACATTTACCATTCCGATTGCATCGTCCCGTGGCTGTCGATGAGAAATTCGTGTCCTGTATGCCGCGACGAGTTACCTTCGGATCGAAGCCCAATGGAGAGCAGAGTCTCAGGGCAAGTCGATGAAGAAACGGTAGGATTAACGATTTGGAGGCTACCAGGTGGAGGCTTCGCCGTCGGAAGGTTTCCCGGCGGCCGTGGCGGCGTTGCTGCAGCGGAGAGTCATTTACCTGTTGTGTACACAGAAATGGATGGTGGGGTCAATACCAGCAACAACGGAGCTCCTAGAAGAATTTCTCAAGCAATGGGAAGCATTAGAGTTAGGGAAAGTCGTGGATTAGGCAGAATATTTCGAAATTTCTTGTCGTTCTTCGGGAGGCTTGGATCTAGGACTAGTCATTCGTCCATTGCTGTCTCAGCTTTTCTCAACTCCCAGTTTGCACCATCATGTTCTGACAAAATGCTGATAGATAACTTCTTTTTTGTTTGA 1143 0.5188 MNPDHTESSTASYWCYRCTRFVRLSCAHHQNHITCPHCDSGFVEEIQANPSSSPNHHPLSPFPSGEAMSLMFADEPQNPFNSRRQGFRRRRRNGSIRSPFNPVIVLRGAADDDGGDQERSSSSFELYYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSEMEANGLGRSENLPASKTAIESMPTIEIVEDHVSTDTHCAICKEAFELGSKAREMPCKHIYHSDCIVPWLSMRNSCPVCRDELPSDRSPMESRVSGQVDEETVGLTIWRLPGGGFAVGRFPGGRGGVAAAESHLPVVYTEMDGGVNTSNNGAPRRISQAMGSIRVRESRGLGRIFRNFLSFFGRLGSRTSHSSIAVSAFLNSQFAPSCSDKMLIDNFFFV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1269 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 246 IPR013083 -
Sto7g1269 380 SUPERFAMILY RING/U-box 179 247 - -
Sto7g1269 380 Pfam zinc-ribbon 12 46 IPR039525 GO:0061630
Sto7g1269 380 PANTHER OS05G0110000 PROTEIN 8 330 - -
Sto7g1269 380 CDD RING-H2_RNF126_like 199 240 - -
Sto7g1269 380 SMART ring_2 199 239 IPR001841 -
Sto7g1269 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 330 - -
Sto7g1269 380 Pfam Protein of unknown function (DUF1117) 263 356 IPR010543 -
Sto7g1269 380 MobiDBLite consensus disorder prediction 76 95 - -
Sto7g1269 380 Pfam Ring finger domain 198 240 IPR001841 -
Sto7g1269 380 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1269 Sto-Chr7 10943041 10944506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1269 138 251 C3H Transcription Factor Family AT5G01980 45.614 4.60e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1269 - - aip:107612938 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1269 7 10943041 10944506 Sto7g1269 7 10943041 10944506 ECH
Sto12g0140 12 881806 882879 Sto7g1269 7 10943041 10944506 ECH
Sto6g0618 6 6542306 6545320 Sto7g1269 7 10943041 10944506 ECH