Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1194 ATGGCTATGGCTATGCCCACTCTGCTTTACATTGCATCATCTCTTATCTCCTTCATGTTCATGGCCGAGGCTAGAATCCCAGGGGTTTACTCCGGTGGTCCATGGGAGACTGCTCACGCCACCTTCTACGGCGGCGCCGATGCTTCCGGCACTATGGGTGGGGCTTGTGGGTACGGCAACCTGTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTTAGCACGGCGCTGTTCAACAGTGGGCTGAGCTGCGGCGCCTGCTTTGAGATCAAGTGCGCAAATGACAGACAATGGTGTCACTCTGGAAGCCCTTCCATCTTCGTCACGGCTACTAACTTCTGTCCGCCTAACTATGCTCTTCCCAGCGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCATTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATCGTCCCCGTCGCCTACCGCCGGGTGGCATGCAGGAAGCAGGGAGGGATAAGGTTCACCATCAACGGCTTCCGTTACTTCAATCTGGTTCTGATCAGCAACGTCGCGGGTGCAGGGGATATCGTGAGGGCTTACGTGAAGGGTTCGAGAACGGATTGGATGCCTTTGAGCCGAAACTGGGGTCAAAACTGGCAGTCAAACGCAGTGTTGGTGGGGCAATCCTTGTCGTTTCGAGTCACAGGCAGTGATAGACGCACTTCCACCTCTTGGAACATCGTCCCCTCCAATTGGCAATTCGGTCAGACTTTCACTGGGAAGAACTTTCGGGTCTGA 786 0.5687 MAMAMPTLLYIASSLISFMFMAEARIPGVYSGGPWETAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTINGFRYFNLVLISNVAGAGDIVRAYVKGSRTDWMPLSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGKNFRV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1194 261 Pfam Lytic transglycolase 70 157 IPR009009 -
Sto7g1194 261 PANTHER EXPANSIN-A4 12 260 - -
Sto7g1194 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Sto7g1194 261 Gene3D - 167 259 IPR036749 -
Sto7g1194 261 Gene3D - 22 163 IPR036908 -
Sto7g1194 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Sto7g1194 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Sto7g1194 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Sto7g1194 261 SMART dpbb_1 70 157 IPR007112 -
Sto7g1194 261 PANTHER EXPANSIN-A15 12 260 IPR002963 GO:0009664
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Sto7g1194 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Sto7g1194 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Sto7g1194 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1194 Sto-Chr7 10087848 10090417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1194 5 261 Expansin Gene Family AT2G39700 83.268 5.44e-163 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1194 - - gmx:100789913 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1194 7 10087848 10090417 Sto7g1194 7 10087848 10090417 ECH
Sto7g1194 7 10087848 10090417 Sto5g1630 5 11483427 11484838 ECH
Sto6g0633 6 6664548 6666376 Sto7g1194 7 10087848 10090417 ECH