Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1156 ATGCGAGAAAGCACTCATAATTTCCAAGACCAAGAGCATGAAGCGCACCATAATAGTGAAGAGGTTCAAGAGATAAGGAATTCTAGGGAGAATGGACAACTTTCGTTTGCTAGGGAGAGCAAATCTAAAAACTTTGTGGATGTTGTCCTAGATTCAGGTTTTCGGAAAAATTGTGCTACTATTGTCAAGCTTACAGAGCCTCTAATTCGAGTATTGCGCATTGTGGATACTGGTTTTTGGTTCAATCCAAGCTACCATTATGACACCAACGAGATGAAAAAGCATAAGAGTGCCATCTCTGGGGTTTTGAATGTCATTGAGAGATATGCTCACAATGATACAGCATTGGAAGAAAAGTTGAATGAAGAGGTTACAATCTTTAGAAATGCAGAAGGAGATTTTGGGAGAAGACTTGCATTAAATAGTCGTCACAAAAAATGCCAGCAGCCAACGagttatcatcatcatcaaaatgGCAGCGGCGGCGAGCTTCCGCCGCTACCACCGCCGGCGCCTCATGCCGCCGCGGCCGCCTCGATCCGGCCGGGATCCATGGCAGATCGAGCCCGACTAGCCAAGATCCCGCCGCCGGAAGCGGCACTTAAGTGTCCTCGCTGCGACTCCACCAACACCAAATTCTGCTACTTCAACAACTACAGCCTCACCCAACCCCGCCACTTCTGTAAGACCTGCCGGCGCTACTGGACAAGAGGCGGCGCTCTTCGGAACGTCCCGGTTGGCGGAGGATGCCGGAGAAACAAGAAGAACAAAAGAAGCCGGTCCAAGTCCCCCGCCGGGCCAACCGAGAAACAGCCGCTTTCCGAGTCGTCCCCGGGTGACCTAATCGGCGGCGGTCATCAATTAATGCCGGCACCGCCGCAGCCGAGCAACTTGCCTTTCATGGGCACGGCATCGCTGAGCCGGTACGGCGGCGGCATGGGAGGTGTGGGCCTAAACTTGACGGATCACATGTTTCACATTGGAATTGGAAGTAATAGTAACGTTGATCAGTGGCGGTTACAGCAATTCCCTACTTTCTTGAACGGTGGTTTCGATTCAGCCGCCGCTGCGGCCACGACATATCCGTTCCAAAGTGAAAGCGTCGAACCGCCATCGTCTGATTTGGTTGGAGATCATAGCTCGTTGGCGGCTGCAGCGGCGGCGGCTGCTTCTTCTAGGGTTAAATTggaagagaataataataataataataatagtggaGCCCTAAATTTTTCAAGGCCTAATTCTCTGAGTAATATGTCAGAAAATAATCACCATAACTACCAACAACAATACTATTCATGGACTTCTACTACTTCTGATTTCTCTTCCACTAGCCATGTCTTGTAA 1350 0.4837 MRESTHNFQDQEHEAHHNSEEVQEIRNSRENGQLSFARESKSKNFVDVVLDSGFRKNCATIVKLTEPLIRVLRIVDTGFWFNPSYHYDTNEMKKHKSAISGVLNVIERYAHNDTALEEKLNEEVTIFRNAEGDFGRRLALNSRHKKCQQPTSYHHHQNGSGGELPPLPPPAPHAAAAASIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPAGPTEKQPLSESSPGDLIGGGHQLMPAPPQPSNLPFMGTASLSRYGGGMGGVGLNLTDHMFHIGIGSNSNVDQWRLQQFPTFLNGGFDSAAAAATTYPFQSESVEPPSSDLVGDHSSLAAAAAAAASSRVKLEENNNNNNNSGALNFSRPNSLSNMSENNHHNYQQQYYSWTSTTSDFSSTSHVL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1156 449 ProSiteProfiles Zinc finger Dof-type profile. 201 255 IPR003851 GO:0003677|GO:0006355
Sto7g1156 449 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 146 436 IPR045174 GO:0003700|GO:0006355
Sto7g1156 449 MobiDBLite consensus disorder prediction 145 181 - -
Sto7g1156 449 MobiDBLite consensus disorder prediction 1 30 - -
Sto7g1156 449 Pfam Dof domain, zinc finger 200 255 IPR003851 GO:0003677|GO:0006355
Sto7g1156 449 ProSitePatterns Zinc finger Dof-type signature. 203 239 IPR003851 GO:0003677|GO:0006355
Sto7g1156 449 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 146 436 - -
Sto7g1156 449 MobiDBLite consensus disorder prediction 397 423 - -
Sto7g1156 449 MobiDBLite consensus disorder prediction 1 27 - -
Sto7g1156 449 MobiDBLite consensus disorder prediction 245 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1156 Sto-Chr7 9589051 9595685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1156 169 448 C2C2-Dof Transcription Factor Family AT3G55370 41.776 2.19e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto7g1156 zf-Dof 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1156 - - gmx:100816635 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1156 7 9589051 9595685 Sto12g0176 12 1046842 1047847 CCT
Sto7g1156 7 9589051 9595685 Sto7g1156 7 9589051 9595685 ECH
Sto7g1156 7 9589051 9595685 Sto10g0618 10 5334412 5335598 ECH