Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1115 ATGAAGAGAAccagagaagaaatagaagagCGTCGCCATCATGGTGAGAGAGAGACAATACTACTTTCCAAAGTTGTCGAAGCGACGTCGTCTAGGAGGCCACCCTATTCTTCCACCACCTCACAGCTGGTAAAGGGTGGTGGGCTTCATGAGTGCAAGACTTGCTTTAAGAGGTTCTCTTCATTTCAGGCTCTTGGAGGGCACAGAGCTAGCCACAAGAAGCCCAAGCTCGTGCCTTCTTCTGAAGATCCGAATCAGATGACGGAGATGCCCAGAAGAATGCACACATGCCATGTCTGTGGGGCAGAGTTCGGGACTGGACAAGCCCTGGGTGGGCACATGAGGAAGCATAGGGCTAAAACTACTGTTGTTGCAGCTGCAGcacccaccaccaacaataATAGCTTTGGTTTGTGCTGGgccttgggcttgggcttgggctttaACGTGGACCTGAACCTGACGCCGTTCGAGAACGGTCTCGGGGATAAGACTGACTGCGTAGATCTTATTCTTCTCCTCCAGACCTCACCTGCGTTTAAGATCTgttcttcaatttttctttttctgtttttgttttAG 582 0.4313 MKRTREEIEERRHHGERETILLSKVVEATSSRRPPYSSTTSQLVKGGGLHECKTCFKRFSSFQALGGHRASHKKPKLVPSSEDPNQMTEMPRRMHTCHVCGAEFGTGQALGGHMRKHRAKTTVVAAAAPTTNNNSFGLCWALGLGLGFNVDLNLTPFENGLGDKTDCVDLILLLQTSPAFKICSSIFLFLFLF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1115 193 SUPERFAMILY beta-beta-alpha zinc fingers 49 117 IPR036236 -
Sto7g1115 193 Gene3D Classic Zinc Finger 47 117 - -
Sto7g1115 193 Pfam C2H2-type zinc finger 50 75 - -
Sto7g1115 193 Pfam C2H2-type zinc finger 95 120 - -
Sto7g1115 193 PANTHER ZINC FINGER PROTEIN ZAT5 33 165 - -
Sto7g1115 193 SMART c2h2final6 50 72 IPR013087 -
Sto7g1115 193 SMART c2h2final6 95 117 IPR013087 -
Sto7g1115 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Sto7g1115 193 MobiDBLite consensus disorder prediction 67 86 - -
Sto7g1115 193 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Sto7g1115 193 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Sto7g1115 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1115 Sto-Chr7 9209391 9210106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1115 1 161 C2H2 Transcription Factor Family AT3G53600 41.317 7.48e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto7g1115 zf-C2H2_6 4.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1115 - - bhj:120088704 112.079