Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g1110 ATGGTTCATCAGCAGGAATTCCGAAAAGGTCCATGGACAGAACAGGAGGACTTCAAGTTGGTCTCTTTTGTGGGCTTATTTGGAGATCGGAGATGGGATTTTATAGCAAAAGTTTCAGGTTTGAATAGAACAGGTAAAAGTTGCAGGTTACGATGGGTTAATTACCTGCATCCTGGTCTCAAACGAGGCAAGATGACACCACAGGAAGAACGCCTCGTGCTGGAGCTTCACGCCAAATGGGGAAATAGATGGTCAAAAATTGCTCGGAAGTTACCAGGGCGGACGGACAATGAGATTAAGAATTACTGGAGGACTTACATGAGGAAGAAGGCACAGGAAAAGAAGCGGTCAGCCTCTCCAATATCATCACCAATATCTAGCTGTGTTTCTTCACTGTCATCAAATAACCATGCAGTGGAATCAAATCCTTCCAAAGAGAATGGAGAAGAAAGCTTTTATGATACAGGAGGTTTTAACAATATGATTGAAGAACAAGAGGGTTACTCTATGGATGACATATGGAAAGATATTGATGTGTCAGAAGAAGAGAACATTATTAATCTGCAGCCAATCTTCTCttgtcctcctcctcctcctcctcatatGCCATCTCCCTCCTCTTGGGAGTATTCTTCAGACTCGCTGTGggtgatggaagaagaagaaagtaagaTGTTTCTCCCCACCACGAGTGATCATTTTTTTAACTGTTACGAACAGGGCAAAGCATTTCTAACTGGCTAG 744 0.3978 MVHQQEFRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTYMRKKAQEKKRSASPISSPISSCVSSLSSNNHAVESNPSKENGEESFYDTGGFNNMIEEQEGYSMDDIWKDIDVSEEENIINLQPIFSCPPPPPPHMPSPSSWEYSSDSLWVMEEEESKMFLPTTSDHFFNCYEQGKAFLTG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g1110 247 MobiDBLite consensus disorder prediction 113 152 - -
Sto7g1110 247 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Sto7g1110 247 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Sto7g1110 247 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Sto7g1110 247 CDD SANT 64 107 IPR001005 -
Sto7g1110 247 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Sto7g1110 247 MobiDBLite consensus disorder prediction 117 149 - -
Sto7g1110 247 CDD SANT 11 56 IPR001005 -
Sto7g1110 247 Gene3D - 9 61 - -
Sto7g1110 247 Gene3D - 64 122 - -
Sto7g1110 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Sto7g1110 247 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 4 238 - -
Sto7g1110 247 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 238 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto7g1110 247 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Sto7g1110 247 SMART sant 8 58 IPR001005 -
Sto7g1110 247 SMART sant 61 109 IPR001005 -
Sto7g1110 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g1110 Sto-Chr7 9155210 9156679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g1110 4 245 MYB Transcription Factor Family AT5G59780 60.643 8.10e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto7g1110 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g1110 K09422 - gmx:100776886 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0203 12 1217535 1219157 Sto7g1110 7 9155210 9156679 CCT
Sto7g1110 7 9155210 9156679 Sto7g1110 7 9155210 9156679 ECH