Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0987 ATGGATGCATCGGACGACTTCCAATCTCTGCTTCGCGAGCAACGCCGAGAGCTCACAGAAGCCGAAGCCATGGACTCCGACTTCGACTTCGCTTTTCGTCTTCAATTGCAAGAGGCACTCGCCGCCTCTCTCGCTTTCCagccctcttcttcttcttcttcttcttcctccgtcgAACCCCAACTTTCCCCCTCGCACGACGCCGTATTCAAACCCACTACCCTTCTCTCTGAAGAACTCGCGAGGGTTGAGCAAGAGATCAATGACCGGAAGCAGAGTGAAATCGAAATTCGCAAGATGAAGGACGATCTCAGCCGTCGGATGCATGATCAGAATGTCGCCAGGGAGATTCTCAGAATCCCCGAGGCCGATTGGATGGAATGGGGCGATAGTTTCGAGAAACCCTTCGACGAGGGTTGCTCGAAGCGGGAGGTTCTCAAGAGCGACGGTGATACTGTTTTCCGATTGTACTTCAAAGGCTGGGTGAGTGAGGAGAGGCATATGGATGAGAAGGTTGTTTTGGCGGGGATTGGGATTGCCATATGTGATCCTCGAGATAATTTGATATTCGAGATGAGTAAGCCAATGGTTGGGAATGGAATGAACAAGATTGCTACTCAGATCAAGGCTTTGATTGAAGGTCTTAATGCTGCTCTTGCTTTGGACTTGAAGCGTCTAACTTATTATTGTGATTACTTTACGCTCTTCCAATTTCTAACTAGAAGATGGCCACCAAAACAAGCGAAGATTGCAATGCTAGTTAACCAGGTGACTTTGCTTCAAAGAAAATTTACTTGCTGCAATGCCCAGCTTGTGCCAAGAAATGATGTCAAGTTTGCATTTAAGCTCGCAAAAGATGCAATTAGTTCTCAGATCACCAAGTGTGCAGAATCTAGCAGTATAAAGAATCTGAATGAGACTTGTGTCATATGTTTGGAGGATACTGATGTCAATAACATTTTTTCTGTTGATGGCTGTCAACACCGGTATTGCTTTACTTGCATGAAACAACATGTGGAGGTGAAGCTACTTCATGGAATGGTGCCAAAATGTCCTCATGAAAAATGCAATTCTGAACTTCTAGTTGATAGCTGTAGAAAATTTTTGACTCATAAACTAATTGAAACCATGCAACAACGAATCAAGGAAGCTTCTATTCCTGTGACTGACAAGATTTATTGCCCCTATCCAAGATGCTCATGTTTAATGTCAAAAACTGAGGTTATAGACTACTCCAACAGCATTCTGCGTCGCCCTGATGAATCAGGACCCGCGAAGTGTTTAAAATGTCACAAGCTTTTCTGTATCAGCTGCAGGGTCCCTTGGCATAGTGCCATGACATGCTCTGATTATAAAAGGTTAAATCCTAACCCTCCTCTTGATGATTTGAAGCTGAAGTCTTTGGCATCAAGGAGTTTATGGAGGCAGTGTGTGAAGTGCAACCACATGATTGAACTTGCTGAAGGCTGCTATCACATGACTTGCAGATGTGGTTATGAATTCTGCTACAATTGTGGTGCTGAATGGAAGAACAAAAAAGCAACTTGTTCTTGTCCACTTTGGGAGGAGGATAATATTTGGATGGAGGATCGTGACAGTGAtttggaagaagaggaagaagatgatgatgatgatgatgatgatgattattttGATTATGAGTCTGATATCTTTGAGGAATGCAAATTAGACGCTGTTGTTGAAGACTCACTATATGAAATGGCAGTTGTTGAAGACTCAATGGAAATGGCAATTGTGGAAGATTCAGAATCTGATCTATTGAATTCATTTAGAAAATTTGTTGCTTTTTTGTGA 1815 0.4121 MDASDDFQSLLREQRRELTEAEAMDSDFDFAFRLQLQEALAASLAFQPSSSSSSSSSVEPQLSPSHDAVFKPTTLLSEELARVEQEINDRKQSEIEIRKMKDDLSRRMHDQNVAREILRIPEADWMEWGDSFEKPFDEGCSKREVLKSDGDTVFRLYFKGWVSEERHMDEKVVLAGIGIAICDPRDNLIFEMSKPMVGNGMNKIATQIKALIEGLNAALALDLKRLTYYCDYFTLFQFLTRRWPPKQAKIAMLVNQVTLLQRKFTCCNAQLVPRNDVKFAFKLAKDAISSQITKCAESSSIKNLNETCVICLEDTDVNNIFSVDGCQHRYCFTCMKQHVEVKLLHGMVPKCPHEKCNSELLVDSCRKFLTHKLIETMQQRIKEASIPVTDKIYCPYPRCSCLMSKTEVIDYSNSILRRPDESGPAKCLKCHKLFCISCRVPWHSAMTCSDYKRLNPNPPLDDLKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWEEDNIWMEDRDSDLEEEEEDDDDDDDDDYFDYESDIFEECKLDAVVEDSLYEMAVVEDSMEMAIVEDSESDLLNSFRKFVAFL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0987 604 MobiDBLite consensus disorder prediction 529 549 - -
Sto7g0987 604 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Sto7g0987 604 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 528 - -
Sto7g0987 604 Pfam IBR domain, a half RING-finger domain 389 448 IPR002867 -
Sto7g0987 604 Pfam IBR domain, a half RING-finger domain 463 516 IPR002867 -
Sto7g0987 604 SMART ibrneu5 460 518 IPR002867 -
Sto7g0987 604 SMART ibrneu5 375 448 IPR002867 -
Sto7g0987 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 388 IPR013083 -
Sto7g0987 604 Coils Coil 4 24 - -
Sto7g0987 604 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 528 IPR031127 GO:0004842|GO:0016567
Sto7g0987 604 Coils Coil 83 103 - -
Sto7g0987 604 Gene3D - 446 575 - -
Sto7g0987 604 Pfam Reverse transcriptase-like 174 287 IPR002156 GO:0003676|GO:0004523
Sto7g0987 604 ProSiteProfiles TRIAD supradomain profile. 304 528 IPR044066 -
Sto7g0987 604 SUPERFAMILY RING/U-box 461 525 - -
Sto7g0987 604 Gene3D - 156 296 IPR036397 GO:0003676
Sto7g0987 604 ProSiteProfiles Zinc finger RING-type profile. 308 355 IPR001841 -
Sto7g0987 604 SUPERFAMILY RING/U-box 306 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0987 Sto-Chr7 7886585 7892409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0987 153 507 C3H Transcription Factor Family AT2G19610 36.667 7.58e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0987 - - ahf:112736554 726.087