Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0953 ATGGGAATAACTGAAGATTTGACACGTGTGCGTCATTGGAAGCGGCAGAATCTTCTTCTAGAAATACCCCCGAGAACGTCAGAAGACCATCCTCAGGATTTTGTTGCAATTAAAATGCCGATGACACCAAGTCCAACACCCAATACCAAGAGAGTGAATTTTCTCATGACCTCTCGCTCTGTTGATGCTCCAATTCACTCTCCAGAGCCTTCTGTGTCAAGAAGCAAATCATCCATTCGAAGTATCTTACCAAAATTGAACTTCAGGTATAAGATGTCATCAGATATTGAAAAGGCTTCTACTGCAGCTCCAGAAATTTCCTCTCCGTTACCTCAGGAAAAGCTTTCAATCGCAAGATCATTGTCCCTTACTAAGATCTTTACTCCTAGGATCAAGAGAACAGCATCGTTACCGGTAGATGAAATTGCACTTTCAAATTCAGAATCTGCTCATGGTGGAAGTGTTGGTGGTTCTCTCTATAGGAAAGAGGCCAAGGGGCAGATAGCCCGCTCTTTGTCGGTGCCTGTTGACGATATGGATAAAAGCATGAGGAGAATGGACACGTTTTTCCGAGTTATTCCTTCCACTCCTCGTGTAAAGGAGAAAAAGGAAACCTTGACCACATCCCCGGCAAAGGATACTGGAGGCGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGCGCTGTTAAATGGTTTAGTATAAAGGGAAACAAGACCTGTGATGTGTGCAAAGAGGAGGTTCGCAACCTACCCGTCACTCTCTTGAGGATCCACACTGTTCTAGCTCAGAATGCTGGAGCTGGTAGGGTTTGGCAGGAAGTACCTGTGCTTGTCATTGTCAGCATGCTGGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTTTACTCTCCTCCATGACATCATCAACCATGGTGAATAGCAGGTTCATCTGGATTTATGCATCTGCACAGTTTGCTCTGGTGGTTCTATTTGCACATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTTGCAACGTTTGCCGGGTTCGGTTTCGTGATGAGTGGAAGCTCCGTACTCGTCGAGATTGTTCGATGGAGAAGAAGATGGCTGGCTTCAGCAGAGCAGCGGCAGTACCATGCTTCTCATACCACAACACAACCGCATTCTGGCGTCCCCATCGCTACTCAAAATGTAGCACTAAATCAGCAAAACTCAAGCCAGAGCTGA 1308 0.4541 MGITEDLTRVRHWKRQNLLLEIPPRTSEDHPQDFVAIKMPMTPSPTPNTKRVNFLMTSRSVDAPIHSPEPSVSRSKSSIRSILPKLNFRYKMSSDIEKASTAAPEISSPLPQEKLSIARSLSLTKIFTPRIKRTASLPVDEIALSNSESAHGGSVGGSLYRKEAKGQIARSLSVPVDDMDKSMRRMDTFFRVIPSTPRVKEKKETLTTSPAKDTGGETFKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIHTVLAQNAGAGRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWIYASAQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGFVMSGSSVLVEIVRWRRRWLASAEQRQYHASHTTTQPHSGVPIATQNVALNQQNSSQS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0953 435 CDD RING_CH-C4HC3_MARCH 213 253 - -
Sto7g0953 435 ProSiteProfiles Zinc finger RING-CH-type profile. 200 259 IPR011016 GO:0008270
Sto7g0953 435 PANTHER OS02G0165000 PROTEIN 3 211 - -
Sto7g0953 435 PANTHER OS02G0165000 PROTEIN 215 426 - -
Sto7g0953 435 SUPERFAMILY RING/U-box 215 256 - -
Sto7g0953 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 257 IPR013083 -
Sto7g0953 435 SMART ringv_2 212 253 IPR011016 GO:0008270
Sto7g0953 435 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 211 - -
Sto7g0953 435 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 215 426 - -
Sto7g0953 435 Pfam RING-variant domain 216 252 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0953 Sto-Chr7 7518321 7521836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0953 214 259 C3H Transcription Factor Family AT2G37950 50.000 1.59e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0953 - - gmx:100788108 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0953 7 7518321 7521836 Sto12g0287 12 1736872 1740935 CCT
Sto7g0953 7 7518321 7521836 Sto7g0953 7 7518321 7521836 ECH