Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0946 ATGCCGCCGAAGTTCGACCCCACTCAGGTCGTCGATGTGTTCGTCCGAGTCACCGGCGGCGAGGTTGGTGCGGCGAGTTCGCTCGCTCCCAAGATCGGAGAAGATATTGCCAAAGAGACTGCCAAGGACTGGAAGGGATTGAGGGTCACCGTTAAGCTCACCGTCCAGAACCGTCAGGCGAAGGTATCGGTGGTGCCGTCTGCTGCTGCGCTTGTCATCAAGGCCTTGAAAGAGCCCGAAAGAGACCGCAAGAAGACCAAGAACATCAAGCACAATGGCAATATCTCCCTCGATGACGTCATCGAGATCGCCAGAGTTATGCGGCCCAGGTCGATGGCCAAGGACCTCAGTGGGACTGTGAAGGAGATCCTCGGCACGTGCGTCTCTGTTGGATGCACGGTGGACGGGAAGGATCCCAAGGATTTGCAGCAAGAGATCACTGATGGGGATGTTGAAGTTCCTCTGGACTAA 471 0.5648 MPPKFDPTQVVDVFVRVTGGEVGAASSLAPKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0946 156 CDD Ribosomal_L11 13 134 IPR000911 GO:0003735|GO:0005840|GO:0006412
Sto7g0946 156 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 77 IPR036796 -
Sto7g0946 156 Pfam Ribosomal protein L11, RNA binding domain 65 134 IPR020783 GO:0003735|GO:0005840|GO:0006412
Sto7g0946 156 Gene3D - 1 71 IPR036796 -
Sto7g0946 156 ProSitePatterns Ribosomal protein L11 signature. 121 136 IPR020785 GO:0003735|GO:0005840|GO:0006412
Sto7g0946 156 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 156 - -
Sto7g0946 156 SUPERFAMILY Ribosomal protein L11, C-terminal domain 66 139 IPR036769 -
Sto7g0946 156 PANTHER 60S RIBOSOMAL PROTEIN L12 1 156 IPR000911 GO:0003735|GO:0005840|GO:0006412
Sto7g0946 156 Gene3D - 72 154 IPR036769 -
Sto7g0946 156 SMART rl11c 13 135 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0946 Sto-Chr7 7454897 7455397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0946 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 83.537 2.18e-97 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0946 K02870 - twl:119990680 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0946 7 7454897 7455397 Sto7g0946 7 7454897 7455397 ECH
Sto12g0296 12 1776588 1777088 Sto7g0946 7 7454897 7455397 ECH
Sto13g3228 13 36213293 36213793 Sto7g0946 7 7454897 7455397 ECH