Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0935 ATGAAGGAATCGGAGAAAAGCTTGGATCCACAGCTATGGCACGCGTGTGCGGGAGGTATGGTTCAGATTCCTCCGGTGAACTCCAGAGTGTTCTATTTTCCTCAAGGCCACGCCGAGCACGCTCAGACCGACGACAACAACCTTAACAATCTCTTCTCCACCTCGTTGAGGATTCCGCCTCTCATTCTCTGCCGCGTGGCATCTGTGAGATTCCTCGCCGACCCCAAAACCGACGAAGTCTTCGCCAAGATGAAGCTGATTCCCACCACCACCGCGAGAGATTCTTTCGACGATTCCGATGATGGGGTTTTGGGGAACGGCAATAACAAGCCCGTCAATCCGGAAAAGCCGTCGTCTTTCGCCAAGACATTGACGCAATCCGACGCCAACAATGGTGGCGGCTTCTCCGTTCCGAGATACTGCGCCGAAACCATCTTCCCCCGGCTCGACTACTCGGCCGAGCCGCCGGTTCAGACCGTCTCGGCCAAGGACGTCCACGGGGAGACGTGGAAATTCCGGCATATATACAGAGGGACGCCTCGTAGGCACTTGCTGACCACAGGATGGAGCACTTTCGTGAACCAGAAGAAACTAATCGCAGGGGATTCCATCGTCTTCCTCAGGGCGGAGAACGGGGATCTCCGGCTCGGGATTCGCCGCGCCAAGCGGGGTTTCGGAGGCCGGCCGGAGACCGGGTGGACCGGGAATTGCGGGGGTTTGTCCTGTTTcttgagagaggagaaagaggaggaggaggagaagaagaagaatagagaGTTGGGAAGTGTAATGGAGGCTGTGAGAATGGCTGCTAGAGGTGAGGCGTTCGAGGTTGTGTATTACCCTCGAGGCGGGACGCCGGAGTTCTGTGTCAAGGCGGCGTGTGTGAGGGAAGCAATGAGGACTCAATGGTGTGGTGGAATGAGGTTCAAGATGGCCTTTGAGACAGAGGACTCTTGTAGGATAAGCTGGTTCATGGGTACCATAGCTTCTGTTCAGGTTATTGATCCTATGCGTTGGCCAAATTCACCTTGGAGACTCCTTCAGCACAACCGCGAACAGCAGATAGTCAGGGTTTCATGGGATGAGCCAGATTTGCTACAGAATGTGAAGCGAGTTAGCCCCTGGTTGGTTGAATTGGTATCGAACATGCCAGCCATTCATTTGACACCCTTTTCGACGCCAAGGAAGAAGCTTCGGCTTCTGGACCGCTCGGACTTCCCCTTCAATGGTCCTCCGTTTTCGATACCGATGATTTTAGGAAACCCCCTCGGGCGTAGCAGCCCGTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTCGGAATATCTCTTTCGGATCTCCACCTTAACAACAACAAACTGCAGTTAGGGCTGCTTCCAACTAACATCCAAGTCCAACAACATCCTAGGATGACCAATGGCGGCGACATGGCCAACCATGGCACGAACAACGAAAGCTTGTCGTGCTTGCTGACCGTGGGAAACTCGTGTAAGAGTTTGGAGAAATCTGATAATATGAAGAGACACCGGTTCTTGCTTTTCGGTCAACCGATTCTCACCGAGCAACAAATCTCTCGAAGCCTCTCTGGCGATAATAAGTCGTCTCAGAATAATAATATTACTGAAAGAGATTTTCTGGATGAGAATAATAGGGACAAAGCAAAGTTCACATTGAGTGATCCACAAGGAAAATCTTCAAGTGTTGCTGAGTATTCTTGTTGGCAACAACTAGGGTTGGATAGTGGTCATTGCAAGGTTTTCATGGAATCCGAGGACGTGGGACGGACGCTCGACCTATCGCATCTCGGCTCTTACGAAGAGCTTTACAGGAGACTAGCCAACATGTTCGCAATGGAAAGATCTAGAATGTTCCACCATGTGCTTTATTGTGATGCAACAGGTGCTGTTAAGAAAACTGGACAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCAGCCAGCAAAGAGTTTTAG 2025 0.4998 MKESEKSLDPQLWHACAGGMVQIPPVNSRVFYFPQGHAEHAQTDDNNLNNLFSTSLRIPPLILCRVASVRFLADPKTDEVFAKMKLIPTTTARDSFDDSDDGVLGNGNNKPVNPEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVSAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRAENGDLRLGIRRAKRGFGGRPETGWTGNCGGLSCFLREEKEEEEEKKKNRELGSVMEAVRMAARGEAFEVVYYPRGGTPEFCVKAACVREAMRTQWCGGMRFKMAFETEDSCRISWFMGTIASVQVIDPMRWPNSPWRLLQHNREQQIVRVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLTPFSTPRKKLRLLDRSDFPFNGPPFSIPMILGNPLGRSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLNNNKLQLGLLPTNIQVQQHPRMTNGGDMANHGTNNESLSCLLTVGNSCKSLEKSDNMKRHRFLLFGQPILTEQQISRSLSGDNKSSQNNNITERDFLDENNRDKAKFTLSDPQGKSSSVAEYSCWQQLGLDSGHCKVFMESEDVGRTLDLSHLGSYEELYRRLANMFAMERSRMFHHVLYCDATGAVKKTGQEPFSDFMKTAKRLTILTDSASKEF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0935 674 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Sto7g0935 674 Gene3D - 118 222 IPR015300 -
Sto7g0935 674 PANTHER AUXIN RESPONSE FACTOR 262 670 - -
Sto7g0935 674 PANTHER AUXIN RESPONSE FACTOR 2 238 - -
Sto7g0935 674 MobiDBLite consensus disorder prediction 535 552 - -
Sto7g0935 674 MobiDBLite consensus disorder prediction 95 128 - -
Sto7g0935 674 MobiDBLite consensus disorder prediction 535 555 - -
Sto7g0935 674 SMART B3_2 120 222 IPR003340 GO:0003677
Sto7g0935 674 CDD B3_DNA 119 220 IPR003340 GO:0003677
Sto7g0935 674 Gene3D - 303 386 - -
Sto7g0935 674 Pfam Auxin response factor 266 349 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto7g0935 674 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Sto7g0935 674 SUPERFAMILY DNA-binding pseudobarrel domain 118 226 IPR015300 -
Sto7g0935 674 MobiDBLite consensus disorder prediction 111 128 - -
Sto7g0935 674 Gene3D - 589 674 - -
Sto7g0935 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 262 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto7g0935 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 238 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto7g0935 674 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0935 Sto-Chr7 7346471 7348950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0935 3 668 B3 DNA Binding Superfamily AT2G28350 55.618 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto7g0935 B3 3.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0935 - - qsu:111995036 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0935 7 7346471 7348950 Sto12g0306 12 1847055 1849565 CCT
Sto7g0935 7 7346471 7348950 Sto7g0935 7 7346471 7348950 ECH
Sto12g0306 12 1847055 1849565 Sto7g0935 7 7346471 7348950 ECH
Sto8g0899 8 5668268 5670494 Sto7g0935 7 7346471 7348950 ECH
Sto13g3225 13 36199068 36200984 Sto7g0935 7 7346471 7348950 ECH