Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0889 TTGGATcatcaaagaaagaaagaaagagagagagaaatgggaAGAGCTCCTTGTTGTGACAAGGCCAATGTGAAGAAGGGACCATGGTCTCCTGAAGAGGACATCAAGCTCAAAGATTACATACACAAACATGGCACTGGAGGCAATTGGATTTCTCTTCCTCACAAAGCTGGGCTAAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTGAGACCCAACATTAAGCATGGAGAGTTCTCTGATGAGGAAGACAGAATCATTTGCACTCTCTATGCTAATATTGGAAGCAGGTGGTCAATAATAGCTGCTCAATTGCCAGGCAGGACAGACAATGATATAAAGAACTACTGGAACACCAAGCTCAAGAAAAAGCTCATGGCTTTGCTTCACATAAGAAAACCAGCATTCATGAACCATCATGATCATCAAAACCCACCATTATTAATCCCCTCTTCTCCATCATCATCACTAATCTCATCCTCCTCATCAATGTTCAATACAGATTGGAGCTCCACTAATCCAACATTATCTTTCACACCCCTTGATCATGAAGATCCcattaattatgattatttcccttctttttctttccaagGAAGTTGCAGTAGTAGTACTAGAGAGATCATGAAGCAACAAGAGGAAGTTATTATGGGTATTCAGACCAATCAGAACTATATTTGCATCAGTGATGATAGTAATAGTAATTTTATGGGTAGTGATGATGGGTTTGGTAGTACTTTTGGACAAACCCCATTAGATCATTTTTACCATATTCAGGACATTAATTAA 801 0.362 LDHQRKKEREREMGRAPCCDKANVKKGPWSPEEDIKLKDYIHKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLHIRKPAFMNHHDHQNPPLLIPSSPSSSLISSSSSMFNTDWSSTNPTLSFTPLDHEDPINYDYFPSFSFQGSCSSSTREIMKQQEEVIMGIQTNQNYICISDDSNSNFMGSDDGFGSTFGQTPLDHFYHIQDIN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0889 266 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Sto7g0889 266 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Sto7g0889 266 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Sto7g0889 266 Gene3D - 81 148 - -
Sto7g0889 266 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 13 160 - -
Sto7g0889 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 74 IPR017930 -
Sto7g0889 266 CDD SANT 28 74 IPR001005 -
Sto7g0889 266 SMART sant 25 76 IPR001005 -
Sto7g0889 266 SMART sant 79 127 IPR001005 -
Sto7g0889 266 Gene3D - 19 80 - -
Sto7g0889 266 PANTHER OS09G0431300 PROTEIN 13 160 - -
Sto7g0889 266 SUPERFAMILY Homeodomain-like 23 121 IPR009057 -
Sto7g0889 266 ProSiteProfiles Myb-like domain profile. 21 74 IPR001005 -
Sto7g0889 266 CDD SANT 82 123 IPR001005 -
Sto7g0889 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0889 Sto-Chr7 6823226 6824945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0889 5 133 MYB Transcription Factor Family AT2G36890 80.620 3.61e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto7g0889 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0889 K09422 - gmx:100808114 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0889 7 6823226 6824945 Sto12g0341 12 2128187 2129829 CCT
Sto7g0889 7 6823226 6824945 Sto7g0889 7 6823226 6824945 ECH