Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0880 ATGTCGTCAAAACCTTCTGCTTTCGACGCTCTCATGTCCGGGGCTCGTGCCGCCGCTAAGAAGAAGCCCCAATCATCATCTCCTAAGAAACGGAAAACCCTAGATTCCAATTctactcaaaaccctaaaaacctCAAAAGCACTGTCCAGTCCTCGGAACCCACGAAATGTACTGACATTAAAGATTCCGAGAAAGCGCAGGAGCCGGCCAAAGGATTGGAGAATGGTGGCTCGACGGGGTCGGAGGGTGCTCTTGCCGCGAAGAGAATGCGCATTGTGAGTTCTCAGGAGAAGATTTCGGAGTTGAAGAAGAAAGTGTCTTTATTGAAGAAGAAGCCTGGAGATTTTGACCCTAGTCTCATAACTTGTTGGGACAAAGGTGAACCCGTGCCCTTTCTGTTTCTTGGTTTGGCATTTGATATGATTGCAGAAGAGACGGGACGGATTGTAATTACAGATATAGTCTGTAATATGTTGAGGACTGTCATGCACACTACGCCCGATGATTTGGTGGCTGTTGTTTATCTTTCCGCAAATAAGATTGCCCCAGCTCATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATCAAGGCGCTTGCAGAGGCATGTGGCAGAACTGAAACACAGATAAAAAATCAGTATAAGGAAAAAGGTGACTTGGGTCTTGTCGCCAAAGCAAGTCGCTCATCTCAGTCAATGATGCGGAAGCCTGATGCATTAACTATTAGGAAGGTTTTCAACACCTTCCGTCTTATAGCGAAGGAATCTGGTAAAGACAGccaagagaagaaaaagaatcatATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTCTACTTCAGtcTAAGTTGCGAATTGGATATGCCGAGCAAACTCTCTTAGCTGCATTGGGCCAAGCTGCAGTATACACTGAAGGACATTCTGTACCGCCTCCTAAAATTCAGTCTCCTTTAGAAGAAGCTGCAAAGATTGTTAAACAAGTATATTCTGTTCTTCCTGTCTATGACAAAATAATTTCTGCACTGCTTACTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCCTGGTGTTCCAGTTGGACCTATGCTGTCTAAAGCAACCAAGGGTGTGTCTGAAGTTCTAAATAAATTCCAGGATGTAGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAAAATGGCTCGGTTGAAATTTATAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGACGTTGTGGCTGCTGTTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGTGTAAAACAGAAAATTCTTCCTTTCCAGGTTCTCAGTACTCGAGCTCGCAAAAATGTGTCTCTGAGTGATATAAAGGTTGATGTATGCATATTTTCTTTTGATGTATTGTACCTTAATGGCAAGCCACTTCTTCAGGAAAACCTGAAAATCCGCAGAGAGCATCTCTATGCCTCTTTCGAAGAAGAACCTGGATTTTTTCAGTTTGCCACAGCAATAACATCAAATGATGTTGAGGAAATACAGAAATTTCTTGACACTTCTGTTGATGCAAGTTGTGAGGGTTTAATTATCAAAACTTTAGATGAAGATGCTACATACgaaccttccaagcgatcactgAACTGGCTAAAACTGAAGAAAGATTATCTGGACAATATAGGGGACTCACTGGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGGGTCTATGGTGCTTTTCTCCTTGCTTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCTGAGGCAGTGCTTGAAGAACGTTCTGCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGCCATATTATCGATATGCTGAGACAATCAATCCTGATGTCTGGTTTGAAGCTTCTGAGGTGTGGGAGGTGAAAGCGGCTGACTTGACTATTAGCCCTGTTCACCGCGCTGCAGTGGGCATAGTAGATTCGGATAAGGGCATATCACTTCGGTTTCCACGTCTACTTCGAATTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTAAAGAATAATCTTATCTGA 2190 0.4164 MSSKPSAFDALMSGARAAAKKKPQSSSPKKRKTLDSNSTQNPKNLKSTVQSSEPTKCTDIKDSEKAQEPAKGLENGGSTGSEGALAAKRMRIVSSQEKISELKKKVSLLKKKPGDFDPSLITCWDKGEPVPFLFLGLAFDMIAEETGRIVITDIVCNMLRTVMHTTPDDLVAVVYLSANKIAPAHEGLELGIGDASIIKALAEACGRTETQIKNQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPPKIQSPLEEAAKIVKQVYSVLPVYDKIISALLTGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENGSVEIYSRNAERNTGKFPDVVAAVSRLKKSTVSSFVLDCELVAYDRVKQKILPFQVLSTRARKNVSLSDIKVDVCIFSFDVLYLNGKPLLQENLKIRREHLYASFEEEPGFFQFATAITSNDVEEIQKFLDTSVDASCEGLIIKTLDEDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLLRIRDDKAPEQASSSEMVKNNLI 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0880 729 Gene3D - 109 375 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto7g0880 729 Pfam ATP dependent DNA ligase domain 373 577 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sto7g0880 729 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 365 583 - -
Sto7g0880 729 Pfam ATP dependent DNA ligase C terminal region 602 713 IPR012309 GO:0003910|GO:0006281|GO:0006310
Sto7g0880 729 Gene3D - 383 582 - -
Sto7g0880 729 Gene3D - 586 728 IPR012340 -
Sto7g0880 729 Gene3D DNA ligase/mRNA capping enzyme 402 527 - -
Sto7g0880 729 MobiDBLite consensus disorder prediction 30 56 - -
Sto7g0880 729 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 115 364 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto7g0880 729 SUPERFAMILY Nucleic acid-binding proteins 585 723 IPR012340 -
Sto7g0880 729 CDD Adenylation_DNA_ligase_I_Euk 362 580 - -
Sto7g0880 729 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 189 726 IPR000977 GO:0003910|GO:0005524|GO:0071897
Sto7g0880 729 PANTHER DNA LIGASE 1 22 724 - -
Sto7g0880 729 MobiDBLite consensus disorder prediction 1 85 - -
Sto7g0880 729 ProSitePatterns ATP-dependent DNA ligase signature 2. 551 577 IPR016059 GO:0003909
Sto7g0880 729 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 397 405 IPR016059 GO:0003909
Sto7g0880 729 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 22 724 - -
Sto7g0880 729 Coils Coil 85 112 - -
Sto7g0880 729 Pfam DNA ligase N terminus 135 306 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto7g0880 729 ProSiteProfiles ATP-dependent DNA ligase family profile. 479 615 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sto7g0880 729 CDD OBF_DNA_ligase_I 585 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0880 Sto-Chr7 6721197 6728092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0880 2 726 Core DNA Replication Machinery Family AT1G08130 70.274 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0880 K10747 - jre:108989700 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0880 7 6721197 6728092 Sto7g0880 7 6721197 6728092 ECH