Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0875 ATGGAAGCAATAGAGGAATTGGAGTTTATGGATAATAACGACGCTACTACTGTTACTCACATCGCTAAGGGAAAGCGTACCAAGAGGCAGAGGCCATTCTCTCCGTGTGCGGTTGTTGCCGCCGCCGGCATCACTACTTCCAGCTCCTCCAGTACTACTGTCTCCGGAGATCACGCCGCCGCCACCGATTACGGCTCGATCTCGTCCGCCACGACGACGAATTACGAGAGCacagaagaagaggaagacatgGCTAACTGCTTGATTCTGTTGGCGCAAGGAGGAGATCATCACACTGCTCGTAATAATACTACTGCTATTGCTATTGCTCAATCGGAAAGAGGCGGAAGCCGGCGGTTCGCGGAGATGGCCGCGGCTACCACCGCCGCGGCGAGAATCGGTTTCTATGTGTACGAGTGCAAGACGTGCAACCGGACGTTCCCGTCGTTTCAGGCGCTGGGCGGGCACAGGGCGAGCCACAAGAAGCCGAAGCTCGTCGTCGTGGAGGAAAAGAaaccaccaccgccgccgccggtTCCGCCGGTATCCTCGCAGATTATCCACAATTTCGAGATCGAAGAAGCGCAATTGAAGAGCGGCGCCCAAATTTCTCTTCAATTAGGGTCTAACAACAACAAGGCGGCGAAGATTCACGAGTGTTCGATTTGCGGGTCGGAATTCACATCGGGTCAAGCATTGGGCGGGCATATGAGAAGGCATAGGGCATCCACAAGCACTAGTAACGGCGCCGCCGTGGAAATGAAGCCGAGGAACATTCTAGCGTTGGATCTTAACCTGCCGGCGCCGGAGGAGGATCTCCGGGATTCGAAGTTCCAGTTTACGCCGAAACAAAAAGCGTTGGTGATGTCTGCTCCGTCTCTGGTGGGGTGCCATTATTAG 900 0.52 MEAIEELEFMDNNDATTVTHIAKGKRTKRQRPFSPCAVVAAAGITTSSSSSTTVSGDHAAATDYGSISSATTTNYESTEEEEDMANCLILLAQGGDHHTARNNTTAIAIAQSERGGSRRFAEMAAATTAAARIGFYVYECKTCNRTFPSFQALGGHRASHKKPKLVVVEEKKPPPPPPVPPVSSQIIHNFEIEEAQLKSGAQISLQLGSNNNKAAKIHECSICGSEFTSGQALGGHMRRHRASTSTSNGAAVEMKPRNILALDLNLPAPEEDLRDSKFQFTPKQKALVMSAPSLVGCHY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0875 299 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 4 299 - -
Sto7g0875 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Sto7g0875 299 Gene3D Classic Zinc Finger 136 240 - -
Sto7g0875 299 SMART c2h2final6 218 240 IPR013087 -
Sto7g0875 299 SMART c2h2final6 138 160 IPR013087 -
Sto7g0875 299 SUPERFAMILY beta-beta-alpha zinc fingers 137 240 IPR036236 -
Sto7g0875 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Sto7g0875 299 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Sto7g0875 299 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Sto7g0875 299 Pfam C2H2-type zinc finger 137 163 - -
Sto7g0875 299 Pfam C2H2-type zinc finger 218 242 - -
Sto7g0875 299 PANTHER ZINC FINGER PROTEIN ZAT5 4 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0875 Sto-Chr7 6670326 6671306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0875 19 299 C2H2 Transcription Factor Family AT2G28200 44.737 5.91e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto7g0875 zf-C2H2_6 2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0875 - - gmx:100785286 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0875 7 6670326 6671306 Sto12g0356 12 2218713 2219634 CCT
Sto7g0875 7 6670326 6671306 Sto7g0875 7 6670326 6671306 ECH
Sto12g0356 12 2218713 2219634 Sto7g0875 7 6670326 6671306 ECH