Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0873 ATGCTTTCTTCAAGGGACATAGTCTCTTCCTTCCCAGATGTACCTCAAATGATGTTTCCTGCATCTCAAGATGAAGATCatcataacaacaataatatggTATTTCCACATCACTCTATTGaaccaccttcttcttcttcttcttcttcttcttcttcttctccttcttccctcCTCTTCAACCTCTCAATCCTCAAAGACAAGCTCACCCAGATGCAAACACTAGCAGGTGCCCTAATATCCCACGGTCCGGCAGCCGGCCCGGGTCACCCGGCCTTACCCGACCCGACTAGTTCTGCCTTGGCCAGCATGAATTCAATAATCCAGGAATTCATAGTCACTGCATCTTCCATGATGCTCACATGTCAACACATGCTTCTCAATTGTCCTGATCATCAAAACTTGGACTGGTTTGGTAGTGAAGACAACATTCTTCAATATACCAATAGTAACAACATTAGTCTCAAGGAGGAAAATCAAAGTGCTGAAACTATTATTGGTGATGAAGACAATGATATAATTGAAGTGAATGCTGCTGATTTGCTTGCAAAGTACACACATTACTGTCAAATTTGTGGGAAAGGCTTCAAGAGGGATGCCAATTTGAGGATGCACATGAGGGCTCATGGTGATGAGTACAAAACCAGTGCTGCATTGAGCAATCCAGTGAAGAAGAGATTGAATTATAGTGGGaagaaagatgatgatgatggtggtgatgatgatgatgatgaggggATGAAGATGGTGGTGATGAGGGCTAAGAAGTACTCATGTCCACAAGAAGGGTGTAGGTGGAACAAGAAGCATGAGAGGTTTCAGCCATTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGAAGTCACTGTCCCAAGATGTATGTGTGCAAGAGGTGCAATCTGAAGCAGTTCTCTGTGCTGTCCGATCTGAGGACACATGAGAAGCATTGTGGGGATGTCAAGTGGCAGTGCTCATGTGGGACTACTTTCTCAAGGAAAGACAAACTCATGGGACATCTTGCTTTGTTCCTAGGACATGCTCCATTAATGTCTCTTACTACTACTACTCCTACTCCTGCAGCCTTGTCCTCTTGTTTAGAAAATTGTTAG 1113 0.3917 MLSSRDIVSSFPDVPQMMFPASQDEDHHNNNNMVFPHHSIEPPSSSSSSSSSSSPSSLLFNLSILKDKLTQMQTLAGALISHGPAAGPGHPALPDPTSSALASMNSIIQEFIVTASSMMLTCQHMLLNCPDHQNLDWFGSEDNILQYTNSNNISLKEENQSAETIIGDEDNDIIEVNAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPVKKRLNYSGKKDDDDGGDDDDDEGMKMVVMRAKKYSCPQEGCRWNKKHERFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDVKWQCSCGTTFSRKDKLMGHLALFLGHAPLMSLTTTTPTPAALSSCLENC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0873 370 ProSitePatterns Zinc finger C2H2 type domain signature. 189 209 IPR013087 -
Sto7g0873 370 SUPERFAMILY beta-beta-alpha zinc fingers 185 212 IPR036236 -
Sto7g0873 370 Pfam Zinc finger, C2H2 type 187 209 IPR013087 -
Sto7g0873 370 PANTHER OS08G0562300 PROTEIN 28 128 - -
Sto7g0873 370 PANTHER OS08G0562300 PROTEIN 148 355 - -
Sto7g0873 370 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 148 355 IPR044300 GO:0010044|GO:0010447
Sto7g0873 370 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 28 128 IPR044300 GO:0010044|GO:0010447
Sto7g0873 370 Gene3D Classic Zinc Finger 293 343 - -
Sto7g0873 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 214 IPR013087 -
Sto7g0873 370 MobiDBLite consensus disorder prediction 23 54 - -
Sto7g0873 370 MobiDBLite consensus disorder prediction 224 245 - -
Sto7g0873 370 MobiDBLite consensus disorder prediction 14 54 - -
Sto7g0873 370 Gene3D Classic Zinc Finger 181 246 - -
Sto7g0873 370 SMART c2h2final6 257 290 IPR013087 -
Sto7g0873 370 SMART c2h2final6 187 209 IPR013087 -
Sto7g0873 370 SMART c2h2final6 295 317 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0873 Sto-Chr7 6653110 6654360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0873 57 349 C2H2 Transcription Factor Family AT5G22890 47.892 7.58e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto7g0873 zf-C2H2 9.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0873 - - gsj:114375424 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0873 7 6653110 6654360 Sto7g0873 7 6653110 6654360 ECH