Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0822 ATGCCGAGCCGGAATGCGATGATTGAATCTCACCGTGGTGGTGGTCAGAACTCGTCGTCATTCCGCGGCATGAGCGCGGCGTCAACCACGTCGTCGTCGTCGGAACTTCGCCGGCCGAGAACCGTGCCGGACCTTATCTCGTACGGATGCCTCGCCGTTAGGTCGCCGGAGGATCTGCCGCGAGTACCGCCGAAGCTACTGCTTAACGTGACGATGCAGGGGAGCCTGGGGCCCGTGCAGGTCGTGATGACGCCGGAATCAACGGTGCGAGATTTGGTGGCGGCGGCGGTGCGGCAATACGTGAAGGAAGGTCGCCGGCCGGTGGTACAGACCACCGATCCTTCCGCCTTCGACCTCCATTATTCGCAGTTTAGCTTAGAAAGTTTGGAGAGAGGGGAGAAGCTAAAGGAGCTTGGATCTCGAAACTTCTTTCTCTGCCCAAGAAATCGTAGCAGCGTCGTCCGCGTGGGAGGCGCAGCCGGCAATGGCGGAAGCGCCAATACGGCGTCGTTTGCATCGTGCTCCAAAGAGTTTCTGCTCTCTCACTCCCAAAACCCTACTCAAACCCCTCTCGCCGCGTCCTGCTTCCTTTCCGCCTCTCTAATGGAGTTCTGGGGTGTTGAGGTTAAGGCTGGGGAGCCAGTTAAAGTAGACCCCACGGAGTTTGATGCATACATTCACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAGGGAGCTGAACCTGTGCTTCTTTACCTAAAATTTGCTGACCAGAAACTTGTTTTGGGAACCCTTTCAAGGGAGAATTTCCCTCAGATATCTTTTGACTTAGTTCTGGAAAAGGAGTTTGAGCTCTCCCACAATTCTAAAACTGGGAGCGTCTTTTTCTATAGCGAGGAAGATGAGGACGAGGAACTCCCAGTGATTACCAAAGATAATGGAAAACCTGATACCAAGAATGAAGTAGCTAAGGTTATTGCTGCCAAAAGTAATGCTGCCAAGGCAAATGATTCGAAAAAGCAGGTCAAGGATTTGATGGATGCTGATGATAGTGATGAGGATGACAGTGAGAGCGATGAAGAAGATGAGGAGACTCCTAAGAAGGCTGTTCAAGGAAAGAAGAGAGCCAATGATTCTGCAGCAAAAACTCCTGTTTCTGCCAAGAAAGCTAAAGCTGAAACTCCTCAGAAGACAGATGCTAAGAAAGGTGGTCATACGGCAACTCCTCACCCTATGAAGAAGGGTGGAAAGAGTCCCAACAGTGATGCCAAATCTGGCGGACTATCTTGCAAATCTTGCAACAAGTCTTTCAACTCTGAAAGTGGCCTGCAACAACATAACAAGGCAAAGCATGGTCAGTGA 1350 0.5126 MPSRNAMIESHRGGGQNSSSFRGMSAASTTSSSSELRRPRTVPDLISYGCLAVRSPEDLPRVPPKLLLNVTMQGSLGPVQVVMTPESTVRDLVAAAVRQYVKEGRRPVVQTTDPSAFDLHYSQFSLESLERGEKLKELGSRNFFLCPRNRSSVVRVGGAAGNGGSANTASFASCSKEFLLSHSQNPTQTPLAASCFLSASLMEFWGVEVKAGEPVKVDPTEFDAYIHLSQAALGEAKKDKGAEPVLLYLKFADQKLVLGTLSRENFPQISFDLVLEKEFELSHNSKTGSVFFYSEEDEDEELPVITKDNGKPDTKNEVAKVIAAKSNAAKANDSKKQVKDLMDADDSDEDDSESDEEDEETPKKAVQGKKRANDSAAKTPVSAKKAKAETPQKTDAKKGGHTATPHPMKKGGKSPNSDAKSGGLSCKSCNKSFNSESGLQQHNKAKHGQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0822 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 424 449 IPR013087 -
Sto7g0822 449 MobiDBLite consensus disorder prediction 418 449 - -
Sto7g0822 449 Pfam Nucleoplasmin-like domain 204 285 IPR041232 -
Sto7g0822 449 ProSitePatterns Zinc finger C2H2 type domain signature. 426 447 IPR013087 -
Sto7g0822 449 SUPERFAMILY beta-beta-alpha zinc fingers 413 446 IPR036236 -
Sto7g0822 449 MobiDBLite consensus disorder prediction 1 38 - -
Sto7g0822 449 Pfam Zinc-finger of C2H2 type 425 444 - -
Sto7g0822 449 MobiDBLite consensus disorder prediction 344 358 - -
Sto7g0822 449 Gene3D Nucleoplasmin core domain 198 298 - -
Sto7g0822 449 MobiDBLite consensus disorder prediction 327 449 - -
Sto7g0822 449 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 202 445 - -
Sto7g0822 449 MobiDBLite consensus disorder prediction 388 402 - -
Sto7g0822 449 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 202 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0822 Sto-Chr7 6183675 6189527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0822 202 443 C2H2 Transcription Factor Family AT3G44750 45.850 4.53e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto7g0822 NPL 1.6e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0822 - - gmx:100795506 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0822 7 6183675 6189527 Sto12g0382 12 2419334 2426602 CCT
Sto7g0822 7 6183675 6189527 Sto7g0822 7 6183675 6189527 ECH