Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0810 atgGGGAATATTACTAATGAAGTTGCTTCTTCTCCTTGCTCGATACGACGTAGTAATGATCAtggtgataataataataataatattattgtgtGTAGTAGTAAGAAGAAGAAAGCAGGAAGAAGGAAGTTCAAAGAGACGAGGCATCCAGTGTATAGGGGTGTCCGAAGGAGGAatggggaaaaatgggtttgTGAAGTGAGGGAACCAAACAAGAAGTCTAGGATTTGGTTAGGGACATACCCTACGCCCGAGATGGCTGCTAGGGCACATGATGTCGCTGCCCTTGCACTTAAGGGCACCTCTGCCCTTCTCAACTTCTCCGACTCCGCTTTTCTTCTTCCGCTCGCCGCTTCCTCTTCCGCCGCAGATATACGAACCGCCGCTGAAAAAGCAGCCACCGCCACCATTATTGATCAGCCtatttattcttcttcttataatagtaatagtaatagtaataataacaataattcgTTGTTCTTGGATGAGGAGGCGTTGTATAATATGCCTGCATTGCTGGATAGTATGGCTGAGGTTCAGGGGATCGCCGCATCAGAAAATCAGCTTCCATTGGGGACACATAGTAAACATGGACGCCTTCTAGAGGTATCCTCGCATGTGAAGCTTCTAAGCCCAACTACTGCAGAAATGTACGAGGAGGAGCAGTCGTAG 675 0.4178 MGNITNEVASSPCSIRRSNDHGDNNNNNIIVCSSKKKKAGRRKFKETRHPVYRGVRRRNGEKWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAALALKGTSALLNFSDSAFLLPLAASSSAADIRTAAEKAATATIIDQPIYSSSYNSNSNSNNNNNSLFLDEEALYNMPALLDSMAEVQGIAASENQLPLGTHSKHGRLLEVSSHVKLLSPTTAEMYEEEQS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0810 224 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Sto7g0810 224 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 SUPERFAMILY DNA-binding domain 51 110 IPR016177 GO:0003677
Sto7g0810 224 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Sto7g0810 224 MobiDBLite consensus disorder prediction 1 27 - -
Sto7g0810 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 183 IPR045277 GO:0003700
Sto7g0810 224 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 11 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0810 Sto-Chr7 6052485 6055210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0810 30 179 AP2-EREBP Transcription Factor Family AT5G51990 50.000 3.25e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto7g0810 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0810 - - gmx:100803317 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0810 7 6052485 6055210 Sto7g0810 7 6052485 6055210 ECH