Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0768 ATGAAAAACATTAGTAGTGATGAGGCAAAGGTGGAAGATGAGGATGAAAAGGAAAAGCATGGTGaacttctttctcttcctcctcATGGGTCCGAAGTATACATTGGTGGCATTCCCCTTGATGCCTCTACAGAGGATTTAAAGACTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTCGGATTATGAAAGGCAAAGATTCTACTGAAAATAAGGGCTTTGCTTTTGTGACTTTCAGAAGCGTGGAATTGGCTTCTAAAGCCATTGATGAGCTCAATAATACAGAATTTAAGggtaaaaagataaaatgttcAACATCTCAAGCAAAACACCGCCTTTTCATTGGTAATGTTCCTAGAAGCTGGAAAGAGGAGGATCTGAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACTAGTATAGAACTAGTCAAGGATATGAAGAACACAAACAATAATCGTGGCTTTGCTTTTATCGACTACTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAATCCAAAATTCAAGTTAGGTGACAATGCCCCAACAGTAAGCTGGGCTGACCCTAAAAATGCAGATTCCTCTGCTTCATCTCagGTGAAGGCAGTATATGTAAAGAACCTACCTAAGGATGTTACTCAAGACCAACTAAAGAAGCTTTTCGAACACCATGGGAAGATCACCAAGGTGGTTTTGCCTCCAGCAAAGTCTGGTCAGGAAAAGAACAGAATTGGTTTTGTACATTTTGTGGAGAGGTCAAGTGCTATGAAGGCACTCAAAAACACTGAAAGATATGAATTAAGTGGCCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGTCTGATCAGAAGTCTGGAGGATCAAATACGCAGAAGTCAGGATTGCTTCCAAGCTATCCACCCAACGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGTGGGTTCGGTGCAGGATATGGTGCTGCAGGTCTTGCTCAGCATATGGTTTATGGAAGGGGACCAACTCCATCTGGAATGGCCATGATGCCCATGTTTTTGCCTGATGGACGAATAGGATATGTCCTGCAACAACCAGGAGTGCAGCCACAAACCCCACCACCTTCACATCATAGAGGTGGCAGTAGGAATAGTGGAGGAGGGAGTGGTGGCAGCAGGAACGGTGGCAGCTCAAGCAAGGGAAGGCACAGCAATGATAGTGGCCACGGCCAAGGGCGTAGATACCGACCATATTAG 1245 0.4297 MKNISSDEAKVEDEDEKEKHGELLSLPPHGSEVYIGGIPLDASTEDLKTFCESIGEVTEVRIMKGKDSTENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWKEEDLRKVVTEIGPGVTSIELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKDVTQDQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFVERSSAMKALKNTERYELSGQVLECSLAKPQSDQKSGGSNTQKSGLLPSYPPNVGYGLVGGAYGGFGAGYGAAGLAQHMVYGRGPTPSGMAMMPMFLPDGRIGYVLQQPGVQPQTPPPSHHRGGSRNSGGGSGGSRNGGSSSKGRHSNDSGHGQGRRYRPY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0768 414 SMART rrm1_1 32 105 IPR000504 GO:0003723
Sto7g0768 414 SMART rrm1_1 112 189 IPR000504 GO:0003723
Sto7g0768 414 SMART rrm1_1 206 279 IPR000504 GO:0003723
Sto7g0768 414 MobiDBLite consensus disorder prediction 1 25 - -
Sto7g0768 414 Gene3D - 194 326 IPR012677 -
Sto7g0768 414 SUPERFAMILY RNA-binding domain, RBD 28 197 IPR035979 GO:0003676
Sto7g0768 414 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 6 383 - -
Sto7g0768 414 Gene3D - 2 111 IPR012677 -
Sto7g0768 414 CDD RRM_SF 33 105 - -
Sto7g0768 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Sto7g0768 414 PANTHER RNA RECOGNITION MOTIF 6 383 - -
Sto7g0768 414 MobiDBLite consensus disorder prediction 360 414 - -
Sto7g0768 414 SUPERFAMILY RNA-binding domain, RBD 200 306 IPR035979 GO:0003676
Sto7g0768 414 SMART rrm2_1 206 279 IPR003954 GO:0003676
Sto7g0768 414 SMART rrm2_1 32 105 IPR003954 GO:0003676
Sto7g0768 414 MobiDBLite consensus disorder prediction 281 301 - -
Sto7g0768 414 Gene3D - 112 192 IPR012677 -
Sto7g0768 414 MobiDBLite consensus disorder prediction 371 401 - -
Sto7g0768 414 MobiDBLite consensus disorder prediction 1 26 - -
Sto7g0768 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 193 IPR000504 GO:0003723
Sto7g0768 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Sto7g0768 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 276 IPR000504 GO:0003723
Sto7g0768 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Sto7g0768 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 176 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0768 Sto-Chr7 5678825 5682397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0768 31 288 Eukaryotic Initiation Factors Gene Family AT1G71770 26.199 9.12e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0768 K13161 - csv:101218373 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0768 7 5678825 5682397 Sto7g0768 7 5678825 5682397 ECH