Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto7g0768 | ATGAAAAACATTAGTAGTGATGAGGCAAAGGTGGAAGATGAGGATGAAAAGGAAAAGCATGGTGaacttctttctcttcctcctcATGGGTCCGAAGTATACATTGGTGGCATTCCCCTTGATGCCTCTACAGAGGATTTAAAGACTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTCGGATTATGAAAGGCAAAGATTCTACTGAAAATAAGGGCTTTGCTTTTGTGACTTTCAGAAGCGTGGAATTGGCTTCTAAAGCCATTGATGAGCTCAATAATACAGAATTTAAGggtaaaaagataaaatgttcAACATCTCAAGCAAAACACCGCCTTTTCATTGGTAATGTTCCTAGAAGCTGGAAAGAGGAGGATCTGAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACTAGTATAGAACTAGTCAAGGATATGAAGAACACAAACAATAATCGTGGCTTTGCTTTTATCGACTACTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAATCCAAAATTCAAGTTAGGTGACAATGCCCCAACAGTAAGCTGGGCTGACCCTAAAAATGCAGATTCCTCTGCTTCATCTCagGTGAAGGCAGTATATGTAAAGAACCTACCTAAGGATGTTACTCAAGACCAACTAAAGAAGCTTTTCGAACACCATGGGAAGATCACCAAGGTGGTTTTGCCTCCAGCAAAGTCTGGTCAGGAAAAGAACAGAATTGGTTTTGTACATTTTGTGGAGAGGTCAAGTGCTATGAAGGCACTCAAAAACACTGAAAGATATGAATTAAGTGGCCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGTCTGATCAGAAGTCTGGAGGATCAAATACGCAGAAGTCAGGATTGCTTCCAAGCTATCCACCCAACGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGTGGGTTCGGTGCAGGATATGGTGCTGCAGGTCTTGCTCAGCATATGGTTTATGGAAGGGGACCAACTCCATCTGGAATGGCCATGATGCCCATGTTTTTGCCTGATGGACGAATAGGATATGTCCTGCAACAACCAGGAGTGCAGCCACAAACCCCACCACCTTCACATCATAGAGGTGGCAGTAGGAATAGTGGAGGAGGGAGTGGTGGCAGCAGGAACGGTGGCAGCTCAAGCAAGGGAAGGCACAGCAATGATAGTGGCCACGGCCAAGGGCGTAGATACCGACCATATTAG | 1245 | 0.4297 | MKNISSDEAKVEDEDEKEKHGELLSLPPHGSEVYIGGIPLDASTEDLKTFCESIGEVTEVRIMKGKDSTENKGFAFVTFRSVELASKAIDELNNTEFKGKKIKCSTSQAKHRLFIGNVPRSWKEEDLRKVVTEIGPGVTSIELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSASSQVKAVYVKNLPKDVTQDQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFVERSSAMKALKNTERYELSGQVLECSLAKPQSDQKSGGSNTQKSGLLPSYPPNVGYGLVGGAYGGFGAGYGAAGLAQHMVYGRGPTPSGMAMMPMFLPDGRIGYVLQQPGVQPQTPPPSHHRGGSRNSGGGSGGSRNGGSSSKGRHSNDSGHGQGRRYRPY | 414 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto7g0768 | 414 | SMART | rrm1_1 | 32 | 105 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | SMART | rrm1_1 | 112 | 189 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | SMART | rrm1_1 | 206 | 279 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Sto7g0768 | 414 | Gene3D | - | 194 | 326 | IPR012677 | - | |
Sto7g0768 | 414 | SUPERFAMILY | RNA-binding domain, RBD | 28 | 197 | IPR035979 | GO:0003676 | |
Sto7g0768 | 414 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 6 | 383 | - | - | |
Sto7g0768 | 414 | Gene3D | - | 2 | 111 | IPR012677 | - | |
Sto7g0768 | 414 | CDD | RRM_SF | 33 | 105 | - | - | |
Sto7g0768 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 205 | 283 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | PANTHER | RNA RECOGNITION MOTIF | 6 | 383 | - | - | |
Sto7g0768 | 414 | MobiDBLite | consensus disorder prediction | 360 | 414 | - | - | |
Sto7g0768 | 414 | SUPERFAMILY | RNA-binding domain, RBD | 200 | 306 | IPR035979 | GO:0003676 | |
Sto7g0768 | 414 | SMART | rrm2_1 | 206 | 279 | IPR003954 | GO:0003676 | |
Sto7g0768 | 414 | SMART | rrm2_1 | 32 | 105 | IPR003954 | GO:0003676 | |
Sto7g0768 | 414 | MobiDBLite | consensus disorder prediction | 281 | 301 | - | - | |
Sto7g0768 | 414 | Gene3D | - | 112 | 192 | IPR012677 | - | |
Sto7g0768 | 414 | MobiDBLite | consensus disorder prediction | 371 | 401 | - | - | |
Sto7g0768 | 414 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sto7g0768 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 193 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 31 | 109 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 207 | 276 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 33 | 103 | IPR000504 | GO:0003723 | |
Sto7g0768 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 176 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto7g0768 | Sto-Chr7 | 5678825 | 5682397 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto7g0768 | 31 | 288 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.199 | 9.12e-18 | 83.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto7g0768 | K13161 | - | csv:101218373 | 644.039 |