LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto7g0745	ATGGGGTCTCGAATGGATCAATACGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCAATTCTTGTTCATCACAAGGCCGAGAAGAAGAAatacgtgttgaaaaaaataaggCTCGCGAGACAGACTGAACGCTGCAGAAGGTCGGCTCATCAAGAGATGGCTCTAATTTCCCGTGTCCATCACCCTTACATTGTGGAATATAAGGAAGCATGGGTTGAGAAGGGTTGCTACGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATGGCTGAATTGATGAAAAGATCAAACGGGGTTTACTTTCCTGAGGAGAAACTGTGCAAGTGGTTCACTCAATTACTGTTGGCTGTAGAGTACCTGCACTCAAATTTTGTTCTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACAAAGGAGCAGGATGTTCGCCTGGGGGATTTTGGACTGGCCAAGACATTAAAAGCAGATGACTTAGCTTCTTCAGTGGTAGGAACTCCCAATTACATGTGTCCTGAATTGCTTGCAGATATTCCTTATGGATTTAAATCTGATATTTGGTCGCTAGGGTGCTGTATATATGAGATGGCTGCACATCGGCCTGCTTTTAAAGCTTTTGATATGGCGGGATTGATAAGCAAGGTAAACCGTTCGTGTATTGGCCCATTGCCACCCTGTTATTCCCCATTCTTGAAAACACTGATCAAGGGCATGCTGAGAAAAAACCCTGAGCATCGGCCAACGGCATCTGATATCTTAAAGCACCCTTATTTACAACCTTATGTTGATCAGTATCGTCCATCTATCAGTCCTCTAACAACCTATTCTCCTGAAAAATCAATTTCTGTTGCCCGTGACCCTCGAAGAACTATGGTTGAAAGTCAAAACAGTAATACTTCAAGTAGTGACAAAGACAGTTTTGTGTCAAGTGAGAGGAACATTTCAGCAGCAATGCCAAAGTGTAATAACAAAGCCACCGAGATAGATTTGGCATctattgatgatgaagCAGATGAGCTAGAGGTGATGAAGACATTGCATAATAAACAGCAACCAAGTGTCGAGTCTAAGCAACCAAAAACAACTAAAAATATAACGATGTCATTAAAAGATGGAAAAGTTAGAGAAAATAGTTCTCCAATGAGAGGCAATCGCATAAAGGTTAGTGGTGCAACACAGAGAACAAAGACAGAGACATTGCTGAAATTGCCCAAATCTCATTTTGTTGCTCCTGGTTTCAAGCCTAATTTTGTGTCACCAACTATTTCACCTGCAAAGGTAACCCCTGATCCTGTAAAACGGATACATGGATCACATCTTTTAAAACATCAGTTACTAATGATAGACTCCTCCCCGAAAACCAAACCCAGACATGATGGGACTCCCCCATTTGGTCCTATTAAACAAGTTGAAGGAGATGTAGTTCTGGCCAAGCCAAGGCAAATGACCCCCCCAAGCTTTCTTAGACGACCTTCATTTCCAGGACAAATGAGGCAGGTCGCGCTTGATCCTCAAAATGCAGTCAGTGACAATGGGAATTTAGGTCCAAATAAAACATCTGCGGAGCCTGAaaagagtcattttcatttacACAATGGTACTGTGCCACACGCCGCTAAAGAAATTGCAAGAGAGCCTCAAAGGGTTTTTGAAAGAGGTTCAAAAGGGATGCAAACAGATGACAGCAACTCTGTCTCATCTTCAGTTTCTATTCAAGGATTTGAGCTTTCTGATGATACAACAACTTTCATTGACTTGAGAGAACAAATTCTTCCTGATTTTGAGACTGTAACCCACCTTGAAAGAGTGGAATCTTGTCCAAATAGCAGCTCTCCTGTTGCTACCACTGAGGAAACCTCTGAGGTTATGGTGCATCCTCAGAAGACAATTACTAGTAATCACAGAGTAAGCTCCAGTTTAACTCCTGATCACACACCACTTGCTTCTAAAGAAATGTTTCTCTATGAAGATGTTCTTCCTATAAATCAGACAAGTATATTTACTGCCTCAGAATTTGATAATAGATCTGTAAGTTCCTCTGTTAAAGTCACTGAAGAAATTACAGAGCTTCAGGACACTGATGAGGAAGTGCCTTCAACCAAATCTCTCATACTTCCTTTACAAAGTTCTGGTGAAAATTTCGTTTGTGAAATTGTTCCTGTGAGCAACCCCAGTAACATGCCTGATGTAGTTAGTAATCCAGAACATAAGTGTATGCCTGATGGTGATGATAAATTCACAGTAAGAGAACTATTTTCCTCTGTGGCTGGCACTGATCCTCCAATTACCTCTAGCTCTAACAAAATATCACCACAGAAAAGTTTGCATGAAGAGAAAGGACCTATTTTGCAGAATCTGACGGAAAGGCCGACTGTTGGCCAACTTCCTCCAGCTTTTGATGATGTCATCCATGTTATACGACATAGCAGCTACCGTGTTGGTAACGAGCAACCAGTAAAAGAATCTGCGGAGATGGGAGTTCGAAATGCGAATGTTGGTAAGTTCATCAATGTAGTAAGGGATGATTTAGAAGCAAGGAACAAGAACACTCCTTTAACCTTTGTTTCCTCAAGTTGCTCTGAATCTGTGAGCTTGAATTCAAACATTTCTGATCATTTAGAAAAGAGAAACATGAGCCCTCCTCCGATTTTACAGTCTTCGAGTTGCTCCGACGCCCCGAGCTTGAAATCAAATGTTTCTGACCATTCATGTGTTGAGGAACCAGACACGAGGAATCCTGTTTCTCCACTTCCTCAATCTGATCCTGGTGAGTTAACAAAATGTAATGCTGTGATGACTGAAGAAGAATCACCAGCAAAGGAAACTTTGGATGTTAAATCCTTCAAGCAAAGAGCAGAGGCACTTGAAGGGCTCTTAGAATTATCTGCAGATTTGCTGAAACAAAATAGATTGGAAGAACTTGCAGTGGTTTTAAAGCCCTTTGGAAAGGATAAAGTGTCCCCAAGGGAGACGGCCATGTGGTTAGCCAAGAGTCTAAAAGGAATGATGATAGAGGACAATGTGGGACGCTCTTCATGA	3051	0.4123	MGSRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALISRVHHPYIVEYKEAWVEKGCYVCIVTGYCEGGDMAELMKRSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKEQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKVNRSCIGPLPPCYSPFLKTLIKGMLRKNPEHRPTASDILKHPYLQPYVDQYRPSISPLTTYSPEKSISVARDPRRTMVESQNSNTSSSDKDSFVSSERNISAAMPKCNNKATEIDLASIDDEADELEVMKTLHNKQQPSVESKQPKTTKNITMSLKDGKVRENSSPMRGNRIKVSGATQRTKTETLLKLPKSHFVAPGFKPNFVSPTISPAKVTPDPVKRIHGSHLLKHQLLMIDSSPKTKPRHDGTPPFGPIKQVEGDVVLAKPRQMTPPSFLRRPSFPGQMRQVALDPQNAVSDNGNLGPNKTSAEPEKSHFHLHNGTVPHAAKEIAREPQRVFERGSKGMQTDDSNSVSSSVSIQGFELSDDTTTFIDLREQILPDFETVTHLERVESCPNSSSPVATTEETSEVMVHPQKTITSNHRVSSSLTPDHTPLASKEMFLYEDVLPINQTSIFTASEFDNRSVSSSVKVTEEITELQDTDEEVPSTKSLILPLQSSGENFVCEIVPVSNPSNMPDVVSNPEHKCMPDGDDKFTVRELFSSVAGTDPPITSSSNKISPQKSLHEEKGPILQNLTERPTVGQLPPAFDDVIHVIRHSSYRVGNEQPVKESAEMGVRNANVGKFINVVRDDLEARNKNTPLTFVSSSCSESVSLNSNISDHLEKRNMSPPPILQSSSCSDAPSLKSNVSDHSCVEEPDTRNPVSPLPQSDPGELTKCNAVMTEEESPAKETLDVKSFKQRAEALEGLLELSADLLKQNRLEELAVVLKPFGKDKVSPRETAMWLAKSLKGMMIEDNVGRSS	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	510	531	-	-
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	293	311	-	-
	Sto7g0745	1016	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Sto7g0745	1016	Pfam	Protein kinase domain	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	510	524	-	-
	Sto7g0745	1016	SUPERFAMILY	Protein kinase-like (PK-like)	4	315	IPR011009	-
	Sto7g0745	1016	CDD	STKc_Nek	7	262	-	-
	Sto7g0745	1016	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	280	311	-	-
	Sto7g0745	1016	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE	1	999	-	-
	Sto7g0745	1016	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	876	905	-	-
	Sto7g0745	1016	SMART	serkin_6	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto7g0745	1016	Gene3D	Transferase(Phosphotransferase) domain 1	90	338	-	-
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	378	398	-	-
	Sto7g0745	1016	MobiDBLite	consensus disorder prediction	876	927	-	-
	Sto7g0745	1016	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	1	999	-	-
	Sto7g0745	1016	ProSiteProfiles	Protein kinase domain profile.	8	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto7g0745	Sto-Chr7	5532024	5537103	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto7g0745	14	263	MAP Kinase Kinase Kinase	AT1G53570	31.765	1.17e-35	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Sto7g0745		Pkinase	1.6e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto7g0745	K08857		-	gmx:100818747	1269.99