Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0705 ATGGAAGAGAATAATAAGTCTGAAGTGCATTTGACTTCAGCAGCTGCTTTTGTGGAGGGTGGAATCCAGGATGCTTGTGACGATGCTTGCAGCATATGTCTTGAAGCATTTTGCGATAGTGATCCTTCAACAGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAGAGAAGCTCTCAATGCCCCATGTGTTGGCAGACCATCAGTCTGAAAGATCCAACCAGCCAGGAATTGCTTGATGCAgtggaaagagagagaaacattAGACTCAATCCACCTAGAAATGCCACAATATTTCATCATCCAGCTCTGGGGGATTTTGAGTTACAACATCTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCTGCTGCAATGGGACGAGCACGTCACATTGCTAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGTCCACACTTTTTGGTATTTTCAACCCATCCTAATTCATCTCCTGTGGCGCCTTCCTCTCCAACTCATGGGGGTGATGGTGAACCAACTCCGGCAATCGCTGTTGCCACTCTACCTTCTCCAACTCCTGCCTCTGGGGAAGAATCATCACAGCCAACTTCTGTTCCTCCTGTTCAAGCAGACCAGGTATCTGCTTCAGGATCTCGATCTACTATTCTTACTGCTGATCACCAAGGATCATCTTACAACAATAGGAGATCTCCTAGTCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGACCATCAGAATTCCAATCATTTTCAGAATCCCTAAAGTCTAAGTTAAATGCAGTTTCAACGAGATATAAAGAGTCTATTTCCAAGAGCACAAGAGGTTGGAAGGAGAGATGGTTCTCTCGGAATAGCTCTATGTCTGATTTGGGATCTGAAGTTAGACGAGAGGTTAATGCAGGAATTGCAACTGTATCACGCATGATGGAACGCCTGGAAACCAGAGACGGTGATAGGACTAACAGCGATTCTGCTCCGAGTCATTTGGAAGATGGTTCAAATGCTGGATCAAATAACCAGCGTTTACCAGACACTGAAGGTGACAGTCTACTGAGAGACAGTGACAGGAAAACATCTTTTGCTGCAGGTTCTAGTTCAAATTAA 1158 0.4439 MEENNKSEVHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQTISLKDPTSQELLDAVERERNIRLNPPRNATIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSSPVAPSSPTHGGDGEPTPAIAVATLPSPTPASGEESSQPTSVPPVQADQVSASGSRSTILTADHQGSSYNNRRSPSQSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNSSMSDLGSEVRREVNAGIATVSRMMERLETRDGDRTNSDSAPSHLEDGSNAGSNNQRLPDTEGDSLLRDSDRKTSFAAGSSSN 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0705 385 MobiDBLite consensus disorder prediction 344 363 - -
Sto7g0705 385 ProSiteProfiles Zinc finger RING-type profile. 30 70 IPR001841 -
Sto7g0705 385 MobiDBLite consensus disorder prediction 327 343 - -
Sto7g0705 385 Pfam Ring finger domain 29 70 IPR001841 -
Sto7g0705 385 SUPERFAMILY RING/U-box 23 78 - -
Sto7g0705 385 MobiDBLite consensus disorder prediction 165 385 - -
Sto7g0705 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 385 - -
Sto7g0705 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 1 385 - -
Sto7g0705 385 MobiDBLite consensus disorder prediction 165 181 - -
Sto7g0705 385 MobiDBLite consensus disorder prediction 203 287 - -
Sto7g0705 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 79 IPR013083 -
Sto7g0705 385 SMART ring_2 30 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0705 Sto-Chr7 5179670 5183455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0705 27 78 C3H Transcription Factor Family AT5G15790 42.308 2.58e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0705 K19043 - gmx:100814908 621.698