Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0549 ATGCACCACCACCGTGCCTCCGCCGTACTGTTCTTgagcttcttctgcttctgcctGGCGTTGAAATCGCCTCTAGTACAGGCGCAGAAACAGCTTCAGCACCACCGGATCCCACTACCGGACTCACATTGGTCCTCCGGCATGGCCACATGGTACGGCGACCCAGAAGGCGATGGAAGCACCGGGGGGGCGTGTGGGTACGGCACCTTAGTGGACGTGAAGCCATTGAGGGCAAGAGTAGGGGCGGTGGGGCCCTTACTGTTCAAGAACGGAGAAGGGTGTGGAGCGTGCTATAAGGTGAAGTGCTTGGACAAGAGCATATGCTCGCGGCGAGCCGTGACGGTTATTATCACCGACGAGTGTCCGGGTTGCCCCGCCGACCAGACCCACTTCGACCTCAGTGGCGCGGCCTTTGGCCGAATGGCTATAGCTGGCGAACATAGTCAAATCAGGGACCGAGGTCAAATCCCCGTCATTTACCGACGAACACCATGTAAATATCCAGGCAGAAACATTGCCTTCCATGTGAATGAAGGTTCCACACCTTTTTGGCTTTCACTTTTGGTTGAGTATGAGGATGGAGAAGGAGACATCTCCTCTATGCATATTCGAGAAGCCGGATCTATAGAGTGGCTACAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGTGGACCTTTGAGGGGACCATTCTCAGTGAAACTAAGCACATCCACTGGGAGATCTCTGTCAGCCAGAGATGTTATTCCAAGCAGTTGGTCTCCAAAAGCCACTTACACCTCTCGCCTCAATTTCTACCCTTAG 810 0.521 MHHHRASAVLFLSFFCFCLALKSPLVQAQKQLQHHRIPLPDSHWSSGMATWYGDPEGDGSTGGACGYGTLVDVKPLRARVGAVGPLLFKNGEGCGACYKVKCLDKSICSRRAVTVIITDECPGCPADQTHFDLSGAAFGRMAIAGEHSQIRDRGQIPVIYRRTPCKYPGRNIAFHVNEGSTPFWLSLLVEYEDGEGDISSMHIREAGSIEWLQMNHLWGANWCIIGGPLRGPFSVKLSTSTGRSLSARDVIPSSWSPKATYTSRLNFYP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0549 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 170 IPR007112 -
Sto7g0549 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 263 IPR007117 -
Sto7g0549 269 Gene3D - 166 264 IPR036749 -
Sto7g0549 269 Gene3D - 32 165 IPR036908 -
Sto7g0549 269 SMART dpbb_1 80 160 IPR007112 -
Sto7g0549 269 Pfam Expansin C-terminal domain 172 252 IPR007117 -
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Sto7g0549 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Sto7g0549 269 Pfam Lytic transglycolase 85 159 IPR009009 -
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Sto7g0549 269 SUPERFAMILY PHL pollen allergen 170 263 IPR036749 -
Sto7g0549 269 PANTHER EXPANSIN-LIKE PROTEIN B1 9 269 - -
Sto7g0549 269 SUPERFAMILY Barwin-like endoglucanases 39 169 IPR036908 -
Sto7g0549 269 PANTHER EXPANSIN-B3 9 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0549 Sto-Chr7 4109367 4111267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0549 17 205 Expansin Gene Family AT4G28250 70.899 6.53e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0549 K20628 - gmx:100804525 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0549 7 4109367 4111267 Sto7g0549 7 4109367 4111267 ECH