Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0537 ATGGCCTTAGATCAATACTTGCAGGAATCCCTTCGCCGAATCGATTCATTCGAAGACAAATCTTACTTAGGGAAGTGGAATTCCACAACTGAAGATCAAGCCATTGCAGATTCTGATTCTAATGCTTCTTCTAGCAGCTTTGACTGCAACATCTGCCTAGAGTGTGTCCAAGATCCAGTGGTCACACTCTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATTTCCATGCCATTTCGCCCGAAACCGAAGACCACGAAAGCCCGCGTTGCCCGGTATGCAAGTCACAAGTCTCACAATCATCCTTAGTCCCATTATACGGCCGTGGCCAGACCGCGGGACCTTCCAAGGGCATGTCACAACACGTAGGGCATGTCATACCCCGGAGACCACTCGGCCCGGCGTGGCCGAATCACTCGGGTAGGTCATCTAGTCCTACTGGCCAAGGAGGTTCCCAATTTCCTACTAATCAACATATGAATGCATTTGATACAACAATTGGGGTGTTTGGTGAGATGGTATATGCAAGAGTGTTTGGGAATCAGTTGACAAACATGTATACTTATCCTAATTCGTATAATGTGGCTGGGAATAGCAATCCCAGGATAAGGAGGCATTTGATGCAAGCGGATAAGTCCCTCAGTAGAATCTGCTTCTTCCTGCTTTGTTGTGTAGTTTTGTGTCTTCTCTTGTTCTGA 708 0.4746 MALDQYLQESLRRIDSFEDKSYLGKWNSTTEDQAIADSDSNASSSSFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFHAISPETEDHESPRCPVCKSQVSQSSLVPLYGRGQTAGPSKGMSQHVGHVIPRRPLGPAWPNHSGRSSSPTGQGGSQFPTNQHMNAFDTTIGVFGEMVYARVFGNQLTNMYTYPNSYNVAGNSNPRIRRHLMQADKSLSRICFFLLCCVVLCLLLF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0537 235 CDD RING-HC_AtRMA_like 47 99 - -
Sto7g0537 235 Pfam Zinc finger, C3HC4 type (RING finger) 49 97 IPR018957 GO:0046872
Sto7g0537 235 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Sto7g0537 235 MobiDBLite consensus disorder prediction 141 159 - -
Sto7g0537 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 112 IPR013083 -
Sto7g0537 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto7g0537 235 MobiDBLite consensus disorder prediction 137 159 - -
Sto7g0537 235 SUPERFAMILY RING/U-box 44 110 - -
Sto7g0537 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 235 - -
Sto7g0537 235 SMART ring_2 49 97 IPR001841 -
Sto7g0537 235 ProSiteProfiles Zinc finger RING-type profile. 49 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0537 Sto-Chr7 4017449 4018192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0537 43 235 C3H Transcription Factor Family AT4G28270 44.724 3.00e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0537 K10666 - gmx:100780643 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0537 7 4017449 4018192 Sto7g0537 7 4017449 4018192 ECH