Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0514 atGTCACTTCACGCTCTCAAGGAAACTCTCAAGCCTTGCACAACCCAACCTTCCTCTTCCACATCCATTAGCCAAACGCAGTCTTCGATTTTTCGTGATTCCAACCTCACAATCCCTAGGGTACCCCCAAAATCCTCTCTCACTCAACAGCTTCGTCGCCTCCAAGACCCATTCGCTGCTCCTCTAATTCAGCCTCACAATTCACATAAGCGAGAGAAGGAACAGAAAATCGAGGAGGTCGAGGAtggggaggaagaagaagaggacggggaggaagaggaagacgaGCCAGTGCTAAAGGGGGCAAAACTCGGTGGAGCTAAATTACAGTTTCAGTTTGATCACACGGGACCCTTTGAGCCCCTGGTCTTGTCTTCGGATGGAGAGGTTCCAGTTGTACAGGTTCCTGCATCTATCAACTGTAGACTGCTTGAACATCAAAGAACAGGAGTGAAGTTTCTGTATAGTTTGTATAAGAACAATCATGGGGGCATTCTTGGAGATGACATGGGTCTTGGGAAGACCATTCAAACAATAGCATTTCTTGCTGCTGTGTTTTGTAAAGATGGAGAGTATATGTCAAAGGAAAACCAATCAGTGATAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCATAACTGGGAGAGTGAATTCTCTAGATGGTCAAACTTTAGCGTTTCTGTTTATCATGGTGCAAACCGGGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGAATTCGTGGTAGCACCTTGTCAGAAATCAAATGGGACATTGTGATTATTGATGAGGCTCATCGGCTTAAGAATGAAAAATCAAAACTTTATATAGCATGTTTAGAAATAAAAACTCAGAGACGTTTTGGTCTTACTGGTACCATAATGCAAAATAAGATCATGGAATTGTTTAATCTCTTTGATTGGGTTGCACCGGGATCTCTAGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCCTCAAGCATGGTCAGAGGTCAACTGCTCCTGAGAGGTTTGTCCAAATTGCCAACAAGCGAAAACAACACCTTGCAACAGTTCTTCAAAAATATATGTTAAGAAGGACGAAGGAAGAGACAATAGGGCATCTTATGATGGGGAAGGAAGACAATGTTGTGTTCTGCACCATGAGTGAATTACAAAAACGGGCATATAGTAGAATGTTACAACTTCCTGATATCCAATGCCTTATAAATAAGGACTTGCCTTGTAGTTGTGGAAGCCCCCTCACTCAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATTATTTGGCCTTACCTTCACAGAGATAACCCAGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGTCTTGTCAAGCTCCAACAGataagcaatcaccttgagCTGATTAAGCCAAACCCCAAAGATGACCCGGATAAACAAagaaaagatgcagagtttgctGCTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAACATGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGCAACATTGTGGCAAAATGAGAGCACTTgaaaaacttttctttacatGGATCTCTCAGGGAGATAAAATTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTTATAAGAAAAGGTTATTGCTTTTCAAGGCTCGATGGATCCACTCCAACTAATTTACGTCAATCTCTGGTCGATGACTTCAACTCAAGTCCAAGCAAACAGGTGTTCCTGATATCAACTCGAGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGATATTCGATCCCAACTGGAATCCCGCTCAAGATTTACAGGCCCAGGACAGGTCCTTCCGTTTTGGACAGAAGCGGCATGTTGTGGTATTCCGACTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGGTGTACAAGCAGCAACTGTCAAACATTGCTGTCTCTGGAAAAATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTTAAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAGCTGTTTACCAGTGAAATAATTCAGTTGCACgaggagagaaaagaaaatggtCAGATAACAGAACAGGAGAAAAAAATTGTTTCCTCAGAAGAAGCTGATATATTAGTATCAGATTCTGAGAACAGACTACGTACGGATTCTGAGAGAACTTCAACAAGTAGTCTCAAAGACCTTGGAATTGTCTATGCTCATCGCAATGAAGACATTGTCAACGCTGGACCTGGTATTCAAGGGAAGATAGATATCAGCATCTCTCCGAGTGATAGCCCAAGCAAGCCAAGCATCCCTATTGTCCAGAGACAGAAACCAGTATGTGTAGGTGAAAAACGTAAAGCTCCTCTAATTGATGAAAGGAAGAGAACCCAATATAAATTGCTTGCTCGGTCTGTGGGCATGGGTGAGCTTGAATTTAGCAAGTGGGTATTATCTGCTACTCCAATGGAAAGAGAGAAAGTGCTTCAAGactataagaagaggaagaagtttCCAAGGGGTTGA 2640 0.3989 MSLHALKETLKPCTTQPSSSTSISQTQSSIFRDSNLTIPRVPPKSSLTQQLRRLQDPFAAPLIQPHNSHKREKEQKIEEVEDGEEEEEDGEEEEDEPVLKGAKLGGAKLQFQFDHTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRTGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFCKDGEYMSKENQSVIRDPVLIICPTSVIHNWESEFSRWSNFSVSVYHGANRDLIYDKLEAHGVEILITSFDTYRIRGSTLSEIKWDIVIIDEAHRLKNEKSKLYIACLEIKTQRRFGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFRDFYDEPLKHGQRSTAPERFVQIANKRKQHLATVLQKYMLRRTKEETIGHLMMGKEDNVVFCTMSELQKRAYSRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQRKDAEFAAAVFGPDIDLVGGNMQNESFMGLSDVQHCGKMRALEKLFFTWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIQLHEERKENGQITEQEKKIVSSEEADILVSDSENRLRTDSERTSTSSLKDLGIVYAHRNEDIVNAGPGIQGKIDISISPSDSPSKPSIPIVQRQKPVCVGEKRKAPLIDERKRTQYKLLARSVGMGELEFSKWVLSATPMEREKVLQDYKKRKKFPRG 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0514 879 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 45 867 - -
Sto7g0514 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 688 IPR001650 -
Sto7g0514 879 SMART ultradead3 139 334 IPR014001 -
Sto7g0514 879 MobiDBLite consensus disorder prediction 79 95 - -
Sto7g0514 879 Pfam SNF2-related domain 156 416 IPR000330 GO:0005524|GO:0140658
Sto7g0514 879 PANTHER SNF2/RAD54 FAMILY MEMBER 45 867 - -
Sto7g0514 879 MobiDBLite consensus disorder prediction 9 53 - -
Sto7g0514 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 326 IPR014001 -
Sto7g0514 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 376 IPR027417 -
Sto7g0514 879 SMART helicmild6 561 644 IPR001650 -
Sto7g0514 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 697 IPR027417 -
Sto7g0514 879 Coils Coil 66 93 - -
Sto7g0514 879 CDD SF2_C_SNF 529 655 - -
Sto7g0514 879 Gene3D - 388 764 IPR027417 -
Sto7g0514 879 MobiDBLite consensus disorder prediction 1 98 - -
Sto7g0514 879 Pfam Helicase conserved C-terminal domain 532 644 IPR001650 -
Sto7g0514 879 Gene3D - 122 375 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0514 Sto-Chr7 3795593 3801768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0514 547 674 RAD5 or RAD16-like Gene Family AT1G11100 36.719 4.56e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto7g0514 SNF2_N 1.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0514 K20098 - gmx:100781003 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0514 7 3795593 3801768 Sto7g0514 7 3795593 3801768 ECH