Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0509 ATGGATGTGCTCAACTTAAAGCCCAAGACCGAGGCCCACCAAAATGAGAAAGGGATACCTAATTATGTAGGTGGAAAGAAAGGCTCCGGCGGCGGCGGTGTGCGGTGTTGCCAGGCGGAGAAGTGCACGGCGGAGCTGAGTGATGCGAAGCCGTATCATCGGAGGCACAAGGTGTGCGAATACCACGCCAAGGCTCAGGTAGTGATGGTGTGTGGCATACGACAGCGTTTTTGTCAACAATGCAGCAGATTTCACGAGTTGGGGGAATTTGACGAGACGAAGAGGAGTTGCAGGAGGCGTTTGGCTGGGCACAACGAGAGGAGAAGGAAGAGCGCGACGTCATCACAAGCGGAATTAGGGACGACGCCACAAAGAAGTGAAGGAGATGATTGA 393 0.5394 MDVLNLKPKTEAHQNEKGIPNYVGGKKGSGGGGVRCCQAEKCTAELSDAKPYHRRHKVCEYHAKAQVVMVCGIRQRFCQQCSRFHELGEFDETKRSCRRRLAGHNERRRKSATSSQAELGTTPQRSEGDD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0509 130 MobiDBLite consensus disorder prediction 95 130 - -
Sto7g0509 130 Pfam SBP domain 37 110 IPR004333 GO:0003677
Sto7g0509 130 MobiDBLite consensus disorder prediction 1 30 - -
Sto7g0509 130 ProSiteProfiles Zinc finger SBP-type profile. 34 111 IPR004333 GO:0003677
Sto7g0509 130 Gene3D - 28 98 IPR036893 GO:0003677|GO:0005634
Sto7g0509 130 SUPERFAMILY SBT domain 35 114 IPR036893 GO:0003677|GO:0005634
Sto7g0509 130 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 20 119 - -
Sto7g0509 130 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 119 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0509 Sto-Chr7 3757882 3758407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0509 23 115 SBP-box Gene Family AT1G53160 67.368 1.50e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto7g0509 SBP 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto7g0509 - - jre:108986645 170.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0509 7 3757882 3758407 Sto7g0234 7 1676155 1676762 ECH
Sto7g0509 7 3757882 3758407 Sto4g2841 4 29159672 29160783 ECH
Sto7g0509 7 3757882 3758407 Sto7g0509 7 3757882 3758407 ECH
Sto7g0509 7 3757882 3758407 Sto13g2203 13 28885112 28897927 ECH